Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 534 / 0 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 401 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 374 / 8e-125 Serine carboxypeptidase S28 family protein (.1) AT3G28680 153 / 1e-43 Serine carboxypeptidase S28 family protein (.1) AT2G18080 106 / 1e-24 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36195 103 / 2e-23 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 98 / 1e-21 Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213200 [exp] 764 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 763 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 635 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 607 / 0 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 590 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 583 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 562 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213000 [exp] 503 / 8e-177 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 492 / 9e-172 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008358 [exp] 543 / 0 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 539 / 0 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 537 / 0 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 528 / 0 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 371 / 2e-123 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 355 / 1e-117 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 325 / 4e-107 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 160 / 1e-44 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 83 / 1e-16 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 57 / 2e-08 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.009G002200.1 pacid=42772123 polypeptide=Potri.009G002200.1.p locus=Potri.009G002200 ID=Potri.009G002200.1.v4.1 annot-version=v4.1 ATGCATCGTGCCATGGTGTTTCAAAGCCTATTTCTTCTTCCACTTCTCTTACTGTTTTCCTTAACCACTGCAACTGCAAAACGGCTTCATACTATTCCAA GACTTAGTCCAATAGGACCGAGAGTTTGGCTGGACCACCCTGATCAAATTTTGGGTGAATCTGTTCGAGAAGATTTTGAAACCTTTTTTTACAACCAAAC ACTTGATCACTTCAACTATAGACCTGAAAGCTATGACACATTTCTACAACGTTATTTGATCAATTCTAAGTATTGGGGTGGTGCCAATGCTAGTGCACCA ATCTTAGTATATCTTGGCGCAGAAGCACCCATTGATGGAGATCTTGATGCAGTTGGATTTCTCGTTGATACCGCTGTTGAATTCAATTCTCTCTTGGTAT ATGTTGAGCATAGATATTATGGAAAATCAATTCCATTTGGATCAAGGGAAGAAGCCTTGAAGAATGCAAGCACGCTAGGATATTTCAACTCAGCTCAAGC TATAGCAGACTATGCAGCAATAATCATTCACATAAAGAAAACATTACAGGCTAAAGATTCTCCGGTTATCGTCATTGGAGGATCATATGGTGGAATGCTG GCTTCATGGTTTCGGCTTAAATACCCTCATATAGCCCTTGGAGCTCTTGCCTCATCAGCACCGGTTCTTTATTTTGATGATATTACGCCACAATATGGAT ACTATGCTCTTGTCAGCAAGGATTTTAGAGGAGCCAGTGAGACTTGCTACCAGACTATACGAGAGTCATGGGAAGAAATTGATGAAGTTGCTTCAAAACC AGATGGTCTCTCAATCCTCAGCAAGAAATTTAAGACTTGCAATCCCTTGACAGACGCCAGTGAGCTCAAGAACCACCTGGACTCCATGTACGCTAATGCT GCTCAGTACAATAAACCACCAACATATCCGGTTAACAAGGTCTGTGGGGGCATAGATGGATGTGGTTTTGGGGATGATCTTCTTGGCAGAGTATTTGGTG GTCTTGTTGCTTATAAAGGAAATAGGTCATGCTACGTCAATGAACCCACTAACCAATCTGAAACATCTGTGGGCTGGAGATGGCAGACATGTAGTGAGAT GGTGATGCCTATTGGTTATGGGAATGACTCCATGTTTCCACCCGATCCTTTTGATTTGAAAGCCTACATAGAAGATTGCAAGAGTTTATATGATGTTACA CCTCGTTTTCATTGGGTCACTACCTATTACGGAGGCCATAGTATAAGACTGATTCTTCAAAGGTTTGCTAGCAATATCATTTTCTCCAATGGGCTAAGAG ATCCTTATAGTAGTGGAGGGGTGTTGGAGAACATTTCAGACACTGTTGTTGCTGTCAAGACCGTCAATGGGTCTCATTGCCTGGATATACTTTTTGCAAA GGAAACTGATCCAGAATGGTTGGTCGCACAGCGAAAGACAGAGATCAAGATTATTAAAGAGTGGATTAATAAGTACTATGCTGATCTAAGCAGGTTTTAG
AA sequence Show only first row Show all	>Potri.009G002200.1 pacid=42772123 polypeptide=Potri.009G002200.1.p locus=Potri.009G002200 ID=Potri.009G002200.1.v4.1 annot-version=v4.1 MHRAMVFQSLFLLPLLLLFSLTTATAKRLHTIPRLSPIGPRVWLDHPDQILGESVREDFETFFYNQTLDHFNYRPESYDTFLQRYLINSKYWGGANASAP ILVYLGAEAPIDGDLDAVGFLVDTAVEFNSLLVYVEHRYYGKSIPFGSREEALKNASTLGYFNSAQAIADYAAIIIHIKKTLQAKDSPVIVIGGSYGGML ASWFRLKYPHIALGALASSAPVLYFDDITPQYGYYALVSKDFRGASETCYQTIRESWEEIDEVASKPDGLSILSKKFKTCNPLTDASELKNHLDSMYANA AQYNKPPTYPVNKVCGGIDGCGFGDDLLGRVFGGLVAYKGNRSCYVNEPTNQSETSVGWRWQTCSEMVMPIGYGNDSMFPPDPFDLKAYIEDCKSLYDVT PRFHWVTTYYGGHSIRLILQRFASNIIFSNGLRDPYSSGGVLENISDTVVAVKTVNGSHCLDILFAKETDPEWLVAQRKTEIKIIKEWINKYYADLSRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.009G002200 [exp]	0	1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030200 [exp]	12.84	0.8424
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	21.77	0.8401
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	26.90	0.8384
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	29.15	0.7175
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027500 [exp]	33.40	0.8377
AT4G32480			Protein of unknown function (D...		Potri.019G099600 [exp]	33.58	0.7752
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.011G032300 [exp]	34.08	0.8353
AT1G22170			Phosphoglycerate mutase family...		Potri.002G093300 [exp]	37.46	0.7895
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.001G155500 [exp]	39.94	0.7485	Pt-ACX1.2
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.003G164500 [exp]	41.47	0.8301

Compare expression of checked genes

Potri.009G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.