Plant FIBer expression Database

Potri.009G002400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08190 1436 / 0 ZIP2, ATVPS41, ATVAM2 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G212700
[exp]
1731 / 0 AT1G08190 1477 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005352
[exp]
1529 / 0 AT1G08190 1437 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Lus10021401
[exp]
1524 / 0 AT1G08190 1431 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00637 Clathrin Region in Clathrin and VPS
Representative CDS sequence
>Potri.009G002400.1 pacid=42770850 polypeptide=Potri.009G002400.1.p locus=Potri.009G002400 ID=Potri.009G002400.1.v4.1 annot-version=v4.1
ATGACTCCAATTACGTCGGAGAATGGCGTTGACGGCGATGACGAGCGAGAAGAAGACGATGAGGAAGACGAAGAACAAGAAGAAGAAGAAGAAGAAGAAC
AAGAAGAGGAACCGAGACTCAAGTACCAAAGAATGGGAGGTAGCATACCTACCCTTTTATCCAGTGATGCGGCGTCGTGTATAGCTGTTGCCGAACGTAT
GATCGCTCTTGGAACTCTCGACGGCACCGTTCACATCCTCGATTTCCTCGGCAACCAGGTTAAGGAATTTGCGGCACATACTGCGGTGGTTAATGATCTT
AGCTTTGATGTGGAAGGAGAATATATAGGAAGTTGTTCAGATGATGGCACTGTTGTAATTAATAGTCTTTTCACCGACGAGAAGGTTTTGAGGTTTGAAT
ATCATCGGCCGATGAGGGCAATCGCTTTAGACCCTGGATATTCTAGAAAAACATCTAAAAGATTTGTTGCTGGTGGGTTAGCTGGTCAATTGTGTTTTAA
TTCCAAAAAATGGCTAGGCTACCGCGACCAGGTTTTGCACTCTGGTGAAGGTCCAATACATGCTGTGAAGTGGAGAACGAGTCTCATTGCGTGGGCTAAC
GATGCGGGTGTGAAAGTTTATGATGCCGCTAATGATCAAAGAATAACTTTTATTGAAAGACCGCGGGGGAGTCCGCGTCCTGAGCTTTTGCTCCCTCATT
TGGTTTGGCAGGATGATACTCTCTTGGTTATTGGGTGGGGGACGTTTGTGAAAATAGCATCGATAAGAGCTAATGAGCAAAAGGGTGCCAATGGGACATA
TAGGCATGTTCCAATGTCTAGTATGAACCAGGTGGATATTGTGGCTTCTTTTCAAACCACCTATTATATTTCAGGAATTGCTCCGTTTGGTGATTCTTTG
GTTGTTCTAGCTTACATTCCTGTTGAAGAAGATGGAGAGAAGGAATGTAGTAGCACCATTTCATCAAGACAGGGCAATGCACAGAGACCAGAAGTACGTG
TAGTTACATGGAATAATGATGAACTTGCAACAGATGCCCTACCTGTACATCGTTTTGAGCATTACAAGGCGAAGGACTATTCCCTTGCTCATGCTCCTTT
CTCAGGTAGCAGCTATGCTGGTGGTCAATGGGCTGCTGGCGATGAACCATTATACTATATCGTATCCCCAAAGGATGTGGTGATTGCAAAGCCTAGGGAT
ACTGAAGATCATATTGCATGGCTTCTAGAACATGGTTGGCATGAAAAAGCATTAGAAGCAGTTGAAGCAGGTCAGGGCAGGAGTCAACTCATTGATGAGG
TGGGATCCAATTATCTTGATCATTTGATTGTGGAAAGGAAATATGGTGAAGCTGCATCTTTGTGTCCCAAATTGTTGCGAGGGTCTGCTTCTGCTTGGGA
GAGATGGGTTTTCCATTTTGCTCATTTGCGTCAGCTTCCTGTGTTGGTCCCATACATGCCAACAGAAAACCCAAGACTTCGTGATACTGCCTATGAGGTT
GCTCTTGTAGCTCTGGCAACAAATCCGTCTTTTCATAAAGATCTCCTGGCAACTGTCAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTATAT
CTGCCATAGATTCTCAGCTAAATACTTCTTCAATGACTGATGCACTCAAGGAGGCACTAGCAGAGTTATATGTAATCGATGGGCAATATGAGAAAGCCTT
TTCACTTTATGCTGATCTTATGAAGCCGGATATATTTGATTTCATTGAAAAACACGACTTAAATGATGCCATCCGCGAAAAGGTTGTCCAACTGATGATG
CTTGATTGCAAGCGTGCAGTTCCTCTATTGATCCAGAACAAGGACTTAATTTCTCCTCCTGATGTTGTCTCCAAACTGTTGAATGCCAGCAATAAGTGTG
ATTCAAAATATTTCTTACATTTATATCTTCATGCATTATTTGAAGCAAATCCACATGTTGGAAAGGATTTTCATGATATGCAGGTAGAACTTTATGCAGA
TTATGATCTGAAAATGCTACTTCCTTTTCTCCGGAGCAGCCAACATTACACCCTCGAGAAGGCATATGACATTTGTGTCAAAAGAGATCTGTTAAGAGAG
CAAGTCTTCATACTTGGAAGAATGGGAAACTCAAAAAAGGCCCTAACTGTCATCATAAACAAATTAGGGGACATTGAAGAGGCTGTAGAATTTGTAACTA
TGCAGCATGATGATGATCTTTGGGAAGAATTAATTAGGCAATGTCTTCACAAACCTGAAATGGTAGGGGTATTGTTGGAGCACACCGTTGGCAATCTTGA
TCCTCTATACATTGTAAATATGGTCCCCAATGGCTTGGAAATACCTCAGCTTAGGGATCGTCTTGTCAAAATTATCACTGATTACAGAACTGAAACGTCT
CTGAGACATGGGTGCAATGATATTCTCAAGACTGATTGTGTAAATCTCTTGATCAAATATTACAAAGAAGCAAGACGGGCTCTTTGCTTAAGCAATGAAG
AAGAAGCTCGAGTGAAAAGGGATGGCAGAGGGGATTCTCAAGCAATTTGGAGAACAGTAGGTGCAAGAGCCATGGAGGTTAAGTCAAAAACTAGGGGAGA
CACAAGATGTTGCATGTGCTTTGATCCCTTCTCTATACTAGATGTATCGGTTGTCGTATTCTTTTGCTGTCATGCTTATCACATGTCTTGTCTTATGGAT
TCCATGCATACTGTAAGTGGAAAAAAAGGGAGTGGAGCCACTTCCAGGATGTCAGAATATGACTATGATAACAATGATGAGGATGACTACGATGAGGAAA
ACAACGATTCTGGTGTGATTCGGTTGAGATGCATCTTATGTACTACTGCTGCAGGTTGA
AA sequence
>Potri.009G002400.1 pacid=42770850 polypeptide=Potri.009G002400.1.p locus=Potri.009G002400 ID=Potri.009G002400.1.v4.1 annot-version=v4.1
MTPITSENGVDGDDEREEDDEEDEEQEEEEEEEQEEEPRLKYQRMGGSIPTLLSSDAASCIAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAVVNDL
SFDVEGEYIGSCSDDGTVVINSLFTDEKVLRFEYHRPMRAIALDPGYSRKTSKRFVAGGLAGQLCFNSKKWLGYRDQVLHSGEGPIHAVKWRTSLIAWAN
DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTFVKIASIRANEQKGANGTYRHVPMSSMNQVDIVASFQTTYYISGIAPFGDSL
VVLAYIPVEEDGEKECSSTISSRQGNAQRPEVRVVTWNNDELATDALPVHRFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRD
TEDHIAWLLEHGWHEKALEAVEAGQGRSQLIDEVGSNYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEV
ALVALATNPSFHKDLLATVKSWPPVIYSALPVISAIDSQLNTSSMTDALKEALAELYVIDGQYEKAFSLYADLMKPDIFDFIEKHDLNDAIREKVVQLMM
LDCKRAVPLLIQNKDLISPPDVVSKLLNASNKCDSKYFLHLYLHALFEANPHVGKDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYDICVKRDLLRE
QVFILGRMGNSKKALTVIINKLGDIEEAVEFVTMQHDDDLWEELIRQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPQLRDRLVKIITDYRTETS
LRHGCNDILKTDCVNLLIKYYKEARRALCLSNEEEARVKRDGRGDSQAIWRTVGARAMEVKSKTRGDTRCCMCFDPFSILDVSVVVFFCCHAYHMSCLMD
SMHTVSGKKGSGATSRMSEYDYDNNDEDDYDEENNDSGVIRLRCILCTTAAG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08190 ZIP2, ATVPS41, ... ZIGZAG SUPPRESSOR 2, vacuolar ... Potri.009G002400
[exp]
0 1
AT2G37080 RIP3 ROP interactive partner 3 (.1) Potri.016G085900
[exp]
3.00 0.8875
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Potri.006G145700
[exp]
3.87 0.8853
AT5G15740 RRT1 O-fucosyltransferase family pr... Potri.015G048100
[exp]
6.00 0.8628
AT3G14172 unknown protein Potri.001G164900
[exp]
8.66 0.8521
AT4G22120 ERD (early-responsive to dehyd... Potri.004G006000
[exp]
11.83 0.8619
AT1G76250 unknown protein Potri.005G249600
[exp]
12.88 0.8869
AT1G19870 IQD32 IQ-domain 32 (.1) Potri.005G236200
[exp]
19.59 0.8734
AT4G31570 unknown protein Potri.018G008600
[exp]
21.93 0.8342
AT5G16300 Vps51/Vps67 family (components... Potri.008G079700
[exp]
27.11 0.8350
AT5G17910 unknown protein Potri.013G068800
[exp]
28.98 0.8376

Potri.009G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.