Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 151 / 6e-40 PIF1 helicase (.1) AT3G51700 137 / 8e-35 PIF1 helicase (.1) AT3G51690 127 / 8e-32 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185950 [exp] 1642 / 0 AT5G28780 213 / 3e-61 PIF1 helicase (.1) Potri.001G165240 [exp] 1642 / 0 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.012G032376 [exp] 1342 / 0 ND / Potri.013G071501 [exp] 1218 / 0 AT5G28780 127 / 1e-31 PIF1 helicase (.1) Potri.011G042150 [exp] 1163 / 0 AT5G28780 174 / 1e-47 PIF1 helicase (.1) Potri.008G203701 [exp] 685 / 0 AT5G28780 70 / 5e-13 PIF1 helicase (.1) Potri.007G048501 [exp] 551 / 0 AT5G28780 123 / 3e-31 PIF1 helicase (.1) Potri.006G157501 [exp] 416 / 8e-131 AT5G28780 196 / 2e-57 PIF1 helicase (.1) Potri.003G004501 [exp] 401 / 6e-130 AT5G28780 162 / 5e-48 PIF1 helicase (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase CL0023 [poplar] [flax] PF14214 [poplar] [flax] Helitron_like_N Helitron helicase-like domain at N-terminus
Representative CDS sequence Show only first row Show all	>Potri.009G002650.1 pacid=42771885 polypeptide=Potri.009G002650.1.p locus=Potri.009G002650 ID=Potri.009G002650.1.v4.1 annot-version=v4.1 ATGACTAGCAAACGACAAAGATTTCAACCATTCCATGATGTTGGGCCTGTTGTTTCTTCACCATACAACTCAACAATCCATATTTATAGTGAAGGAAATT TGGGTGACAAAAATTTTTCATTAACGCAAGCAACACCATACAACTCTGATCATCTAATCAGTGATCACTCGCTTTTACATACAACTGATGATGGGGAAAC ATACGAGTATGTTGACTTTGGTGATAAGACTTTTACATGTCGCCATTGTAATGCGCTTTTTTGGCTCCAAGAACGTCTTGTATGTTCATCCAAAAAGAAT CCATCTTTCTCACTTTGTTGCCTTAATGGTCGAGTTTCCCTTCCAGCTATGCAACCAACTCCTTCAATTCTTGATTTTCTTCTTGATCCCAACAATTGCT CTGCCTCAAAAAAATTTCGGGACAATATACGAGCTTATAACTCTATGTTTGCTTTCACATCAATGGGCGCAAAGATTGATACTTCTGTTAATGATCAACC AGCTCCATATGTGTTCAAGATAAGTGGTCATTGTCATCATTTGATGGGCTTCCTCTTACCTGTTAATGGAGAATCACCAAAGTTTGCACAGCTTTATGTG TTTGACACTACTCACGAAGTTGCAAATAGACTTTTACCATTCACAAGAGACTCCAAATCATCATCTCTTGATGAGAATATTGTTGTGGATCTTTTAAGAA TGCTTGATGAAACAAACGAGCTTGCCAAATTGTTTCTTGTTGGAGATATTGGAGATTTTTTCTCTAAACGAGATATAATTATTGAATGCTTTTCAGGTTC TTTAAAAAGAATCTCAAAATTACATCCAAAATTCATGGCATTACAGTATCCACTTTTGTTTCCTTATGGTGAAGACGGCTACTCCTGTAATATTATGAAA AGGTCAAGAGTTCCGATGCGAGCTTATTATGCTTACCTTATCAATGAAAGGCCTGGGTGCGATAATACCATCATTAAAGGAGGTCGTTTGTACCACCAAT TCTTGGTTGATGCATTTGTTAATGTTGAAGAAGATCGTCTTGATTATATCAGAGCTAATCAAAAAGATTTACGTACAAAAGTTTATAGAGGTATCCATGA AGCTGTGCTTAATGGGGATGTTGAAGGTTTCTCAACTGGGAAAATCATTGTTCCATCTTCTTTAACTGGTAGCCCACGTTATATGATCAATAATTATCAG GATGCAATGGCTATATGTAGAGCCTATGGAAATCCTGACCTATTTATTACATTCACATGTAATGTTAGTTGGCCTGAGATACGAATGGAGCTTACAAAAG GTCGAATTTACAAACATGAAGACAAGCCTGATATCATTACACGTGTTTTTAGATTGAAGCCTTTTGGTCAGACAATTGCAGATGTTTGTGCAATTGAATT TCAAAAGAGGGGTTTGCCACACACTCATATATTGATCTGGCTACACTCGAATTTTAAATGTCGTTCACCCGAAGATGTTGATTCCATTGTTTCAGTTGAA ATCCCTGACAAATTTACAGATCCAAAATGCTATGAAATTGTTTCAAAATTCATGATGCATGGTCCATGTGATCTTGCAAATCCAAAATCTCAGTGTATGA ACGAGGGAGTTTGCTCAAAAAGATTCCCGAAAAAATTCAAGATGCAAACTGTTTTTGATGATAATGGCTTTGTTTATTACAGACATCGTGATCTTAAAGA CAATTTTGTTATAAAAAATGGCATTCAGCTCAATAACAGATATGTTGTTCCATATAATAGGGAACTCTTATTACGATACAATGCCCACATAAATATTGAG ATCTATTGTCAATCAATGTTAATTAAGTATCTTTTTAAGTACGTAAGCAAGGGCTCTGACAGATGTAGAGTTGTTGTTGAAAAAGATCGTGTTGATGAGA TCCATGCATATATGAATTATCGTTTTATATGCCCATATGAAGCGGTCTGGCATCTTCTACAATTTCCAATACATTCAAGATCACCTTCTGTTGAGCGACT TCAAATCCATTTGCCATTGCATCAAAATGTTGTTTACTCTGGAAATGAAAGTCTACCATCAATACTTAAAAAACCAGGTATTGAAAAAACAATGCTCACA GAATGGTTCACACGGAATAGAATTGATCATGAAGCACGTCAGCTTTACTACTCAGAATTTCCACATAAATATATTTGGGATCCTGGTAAAAAAGAATGGA TTCCAAGATCAAAAGGTTTTATTCTTGGTCGATTAACATATGTTCACCCTGCTTCAAGAGAACTCTATTTTCTAAGACTACTCCTTAACCATGTAAGAGG AGCGCTGACCTTTGATTATCTAAAAAATGTTTCGGGTGTTGTGCATCCAACATTTCAACTTGCTTGCAAGACCTTGGGACTTTTAGGAGATGATAAAGAA TGGGAAGACGTCTTCTGTGAGGCCATGGCTACTGCAACATCTCCTCAAATTAGGAATCTCTTTGTCAGTGTTATTCTTTTTTATGATGTTGCTGATCCAG AAGTTTTGTTCAATAAATTCTGGCGTTCAATGTATGATGATATTATCACCCGTTTCAAATCCAGCTTTGCCATGCCTAATCTTAAATTATTCGATGATGA GCTTAAAAACTATGTTCTATATAAGCTTGAGCTTCTCTTCAATGTTGCTGGCACATCTCTTGAAAAACACAAGCTTCCAATGCCTGATGGGCATTTATTG TCAGAAATAAAGAATAAACTTTTGAGAGAAGAACTTAACTACGATGTTGCAGATCTTATATGTCAATATCCATCAGCTTTCCCACAACTGAATCAATGTC AATTGAATGTTTATGATTGTGTTGTTAAATCTGTCCTTGAAAAAAGACAAGAATTAATTTTTGTTCATGGCCATGGAGGAACTGGGAAAACATTTTTGTG GCATACAATAATTAATCGGTTGAGATCAGATGGTTTAATTGTCCTTGTTGTTGCATCATCGGATATCGCATCACTTTTGCTTCCTGGTGGTCGTACAACT CATTCAAGATTTAAGATCCCCCTTACTGTTTCTGATACTTCATCATCATTAGATCGTTCGCTTCGTAATGTCCTGACAAATGGTAACGACTTGCCCAATG ATAAACCATTCGGTGGGAAATCAATTTTGTTAGGAGGACATTTTAGACAAATTTTACATGTTATTCCTGGAGGAACAAAGGAAGACATTGTTCATGCATC TCTTTGCAACTCTATTTTGTGGTCTAAATTTAAAGTTCTCACTCTTACAAAGAATATGAGGCTATCATCCAATGGTCTTTCAAATGATAAAAAAAAAGAA CTTGCTATTTTTGCCAACTGGATTCTTGCAATTGGTGATGCAACTCAACAAGATGCTCTATTCCCAGATGATTATGATGCATCCATGGTTAAAATACCGC AAGATCTTTTGGTTGAAGCTGGATCTAACCCCATATTAGCAATTGTTTCAGCAGTGTATCCCTCTATTTGTGAAATCAATATTGATCCATGCTATTTTAG AGAGAGAGCAATTATAACTCCAAGAAATGCTACAGTTTCTGAAATCAATGATTTTATTTTAAACATGTTGCCAGGGATGAAGCGGATTTACCTAAGTACT GATACTGTTTGCAAAACATCGAGTGATGGTGATAATGCAAATATTTTGTATCCTGTTGAATTTATCAATCAACTTGAGTTCAATGGAGTGCCATCCCACA CAATTTCCTTGAGAATTGGCACACCAATAATGCTTTTACGCAATCTTAATTTATCAGCTGATTTATGTAATGGAACAAGACTTATTGTTACGCAACTTGC TGAGAGGGTCATGGAAGCTCAAATAATAACAGGCTCTTTTATTGGCAATCGTGTATTTATTCCAGGATTACAATTTCCTATAAGATCGTGTTATGCTATG ACAATAAATAAAAGTCAAGGACAATCGTTGAAAGTTGTCGGGGTTTTTCTCAAGGATCAGATTATCACATGCGATACTGAAGAAAATCATTCAATCTATG CGAAAAACATTGTGTATAAAGATGTTCTTAGCTCTCTATCAGTATCTTAA
AA sequence Show only first row Show all	>Potri.009G002650.1 pacid=42771885 polypeptide=Potri.009G002650.1.p locus=Potri.009G002650 ID=Potri.009G002650.1.v4.1 annot-version=v4.1 MTSKRQRFQPFHDVGPVVSSPYNSTIHIYSEGNLGDKNFSLTQATPYNSDHLISDHSLLHTTDDGETYEYVDFGDKTFTCRHCNALFWLQERLVCSSKKN PSFSLCCLNGRVSLPAMQPTPSILDFLLDPNNCSASKKFRDNIRAYNSMFAFTSMGAKIDTSVNDQPAPYVFKISGHCHHLMGFLLPVNGESPKFAQLYV FDTTHEVANRLLPFTRDSKSSSLDENIVVDLLRMLDETNELAKLFLVGDIGDFFSKRDIIIECFSGSLKRISKLHPKFMALQYPLLFPYGEDGYSCNIMK RSRVPMRAYYAYLINERPGCDNTIIKGGRLYHQFLVDAFVNVEEDRLDYIRANQKDLRTKVYRGIHEAVLNGDVEGFSTGKIIVPSSLTGSPRYMINNYQ DAMAICRAYGNPDLFITFTCNVSWPEIRMELTKGRIYKHEDKPDIITRVFRLKPFGQTIADVCAIEFQKRGLPHTHILIWLHSNFKCRSPEDVDSIVSVE IPDKFTDPKCYEIVSKFMMHGPCDLANPKSQCMNEGVCSKRFPKKFKMQTVFDDNGFVYYRHRDLKDNFVIKNGIQLNNRYVVPYNRELLLRYNAHINIE IYCQSMLIKYLFKYVSKGSDRCRVVVEKDRVDEIHAYMNYRFICPYEAVWHLLQFPIHSRSPSVERLQIHLPLHQNVVYSGNESLPSILKKPGIEKTMLT EWFTRNRIDHEARQLYYSEFPHKYIWDPGKKEWIPRSKGFILGRLTYVHPASRELYFLRLLLNHVRGALTFDYLKNVSGVVHPTFQLACKTLGLLGDDKE WEDVFCEAMATATSPQIRNLFVSVILFYDVADPEVLFNKFWRSMYDDIITRFKSSFAMPNLKLFDDELKNYVLYKLELLFNVAGTSLEKHKLPMPDGHLL SEIKNKLLREELNYDVADLICQYPSAFPQLNQCQLNVYDCVVKSVLEKRQELIFVHGHGGTGKTFLWHTIINRLRSDGLIVLVVASSDIASLLLPGGRTT HSRFKIPLTVSDTSSSLDRSLRNVLTNGNDLPNDKPFGGKSILLGGHFRQILHVIPGGTKEDIVHASLCNSILWSKFKVLTLTKNMRLSSNGLSNDKKKE LAIFANWILAIGDATQQDALFPDDYDASMVKIPQDLLVEAGSNPILAIVSAVYPSICEINIDPCYFRERAIITPRNATVSEINDFILNMLPGMKRIYLST DTVCKTSSDGDNANILYPVEFINQLEFNGVPSHTISLRIGTPIMLLRNLNLSADLCNGTRLIVTQLAERVMEAQIITGSFIGNRVFIPGLQFPIRSCYAM TINKSQGQSLKVVGVFLKDQIITCDTEENHSIYAKNIVYKDVLSSLSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.009G002650 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	33.22	0.6331
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.015G011800 [exp]	51.00	0.7376
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.014G163301 [exp]	58.01	0.7134
					Potri.005G071951 [exp]	153.17	0.6106
AT3G50940			P-loop containing nucleoside t...		Potri.005G115200 [exp]	226.17	0.6543
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099601 [exp]	263.46	0.6408

Compare expression of checked genes

Potri.009G002650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.