Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27900 1333 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212600 [exp] 1775 / 0 AT2G27900 1301 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009613 [exp] 1337 / 0 AT2G27900 1331 / 0.0 unknown protein Lus10000865 [exp] 1156 / 0 AT2G27900 1143 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10474 [poplar] [flax] DUF2451 Protein of unknown function C-terminus (DUF2451) CL0295 [poplar] [flax] Vps51 PF10475 [poplar] [flax] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Potri.009G002900.3 pacid=42772784 polypeptide=Potri.009G002900.3.p locus=Potri.009G002900 ID=Potri.009G002900.3.v4.1 annot-version=v4.1 ATGCAGCCGAATCTGTTCCCATTCGGTAGCGTATTCGGGAACCCGTTTTTGTTAAATGCTGATTTAGGAGAAGAAGGTGTTCGTTTTGGATTTGAGAGTT CTAGATTGTTCTTTTTGGTCCCCTTTTTGTTGTTGCAAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGACAGCGGCGGAATGGATTTATCAAAAGTTGG CGAGAAGATTTTGAGCTCTGTTCGCTCTGCTAGATCTCTTGGTCTTTTGCCTCCCACCGTTGATCGCCCGGAGGTTCCAGCCCGAGCTGCAGCAGCTGCT GCTGCTGCTCGTGTGCTTGCAGGAATGCCTCCTCATCAGCGGTTTAATCTTCCTTCAAGTTCTGAAGAACTACGATCAATATACGGAAGCAGAATACAAG GTCACATGGTGGAGGAGCTGGAGGAAGACTTCTATGAAGAGGATTTTGATCCAGTTAGGCATATTCTAGAGCATGTTCCATCTGAAGAAAACGAATTAAT GTATTTTGAGGAACAGGCCACTCTTAGAATAGCTCAACTAGATAGAGTAGCAGAACGTTTATCCCATCATGTTATGGAGCATCATGAAGTAATGGTGAAG GGGATGAATTTGGTGAGGGAAGTAGAGAAAGATTTAAAGGTTGCAAATGTCATCTGCATGAATGGTAGAAGGCACCTGACTTCATCAATGAATGAGGTTT CAAGGGATCTTGTAGTGAATTCTAATTCCAAAAAGAAACAAGCTCTCCTGGACATGCTTCCAGTATTAACTGAGCTTCGTCGTGCATTAGACATGCAAAT AGCACTTGAATCCCTGGTTGAAGAAGGAAATTACTGCAAGGCGTTCCAAGTCCTATCTGAGTATTTGCAGCTATTAGACAGTTTCTCAGGGCTTTCAGCA ATACAGGAGATGAGCCGTGGGGTTGAGGTTTGGTTGGGGAGAACCCTTCAAAAGCTGGATGCACTTTTGCTGGGAGTGTGCGAGGAGTTCAAGGAGGAGA GTTACATAACAGTAGTTGATGCATATGCTTTAATTGGAGATATCTCTGGTCTTGCTGAAAAGTTGCAGAGCTTCTTCATGCAGGAAGTTTTATCGGAATC CCACTCTGTGTTGAAGATTATTGTACATGAGGACCTGGAAATACAGATGCAGAACAATAGACTTACCTACAGTGATCTATGCCATCAGATACCTGAATCT AAGTTCAGGACGTGTTTATTGAGAACATTAGCTATCTTATTCAGGTTGATGTGTTCCTATCATGAAATAATGAACTTCCAACTGGAGAGTAAGGATTTGG TATTTCAAACATCTGATATGAAGCAAGATTCCTTAGGAAGTAATGGATCTCCTCAATCTGTAGATGGAATGCTTGGTTCATCTTCTATCGAGGAATCTAC AACAACTTCTATGTATCAAGATTGCAATTTTGATGTAGATGAAACTAAAAGTAATGGTGGTGAAGCACCAAGCAGTGAATCCCCTTGGTATCATCTGCGA AAAGAGGCGACAACATTTGTTTCACAAACTCTTCAGAGAGGACGAAAGAATCTTTGGCAGCTTACAACAAGCAGAGTATCAGTATTGCTTTCTTCTGCAG TTTTTAGCTCTATGAGTGTGCACCAATTCTTGAAAAATTATGATGATTTGAATGTATTCATCTTGGCTGGGGAAGCCTTCTGTGGAGTTGAAGCAATTGA GTTCAGACAGAAGTTGAAGGCTGTATGCGAGAATTATTTGCTGGCATTTCATCGGCAAAATATTCATGCACTCAAAATGGTATTGGAAAAGGAAAGTTGG CTGAAATTGCCACCAGATACTGTACAAGCAATTAGTTTTGCTGGGCTTGTTGGTGATGGGGCAGCCCTGATAGTTCCATCTCATGATAACTCCTCTAATG CAAAATTGCATCATTCTAACAAATCAGTGAAATCTGTTGATGCCAATAGCAAGAAAAGTGGATTTTCCTCTTGGATTAGAAGTGGAAATCCATTTTCGCC AAAATTAATCCCCACTTCAGTAGATGGTCACAGTTCTTCCCTGCTTAATGGGGCAACCGCCGTTGAATATGATGAACATGCAAATGATACGGTGTCTCCC CAAGGTAATGGTGCAAGTCATAAAAATGGAATGCCCGTTTCAGAAGATGAAAATGAAGATCTACTTGCAGACTTCATCGATGAGGACAGTCAACTCCCAA GTCGAATTTCAAAACCAAAAGCTCCTAAAAGTAACTCTTCACATTGTAAAACTGATGAAATATCTGCACAGACAGGATCATCTCTTTGTCTTCTCAGGTC AATGGACAAATATGCAAGGTTCATGCAGAAACTAGAAATAGTAAATGTTGAGGTTTTTAAGGGTATATGCCAGTTATTTGAGATTTTCTTCTATTTTGTG TTTGAAACATTTGCTCAGCAGACCTCTAATTCAAGTGGAAAATCTGACTCTCTCAAATATCGGCTGAAGACAGCCATATCCAGAATTACACAAGATTGTG ACCAATGGATAAAACCCCAGCTGACCCCTGTTTCATCCTCTTCACCCACATCTTCGAGCACACATATTCATGGAGATGTAACACCTGCTAGTCCTTCAAA TCATTTGCTAGCCACATCCTTTGGTCTCAAGGAAAGATGTGCTGCTGCTGATGCCATATCTCTTGTTGCTCAAATATTACACAGATCTAAAACTCATCTT CAGTCAATGCTTCTTCAAAATAATCCAGCTATAGTGGAAGATTTTTTTGTCATACTGGTGGATTCTGTACCTGATCTTACAGAGCACATACACAGGACAA CTGCAAGATTACTTCTTCATATCAACGGGTATGTTGATCGGATTGCTAATGCTAAATGGGAAGTAAAAGAGCTTGGGCTAGAGCACAATGGGTATGTTGA TTTACTGTTGGGAGAATTTAAGCACTATAAAACGAGGCTTGCACATGGTGGTATTCACAAAGAGGTTCAAGACCGCCTTTTAGAATATGGTCTCGAAATT GTTGCTGAAACCCTCATTGAAGGTCTATCACGGGTGAAGAGGTGTAGTAATGAAGGACGAGCCCTTATGTCATTAGATCTTCAGGTATTGATCAATGGCC TACAACATTTTGTCCATGTAAATGTCAAGCCAAAATTACAAATGGTTGAAACTTTCATAAAGGCTTACTATCTTCCAGAAACTGAGTATGTCCACTGGGC TCGAGCTCACCCGGAATACAGAAAAAATCAAATTGTTGGGTTGATCAACCTCGTTGCTACAATGAAAGGTTGGAAGAGGAAAACCAGGTTGGAAGTCATA GAGAAAATCGAGTGA
AA sequence Show only first row Show all	>Potri.009G002900.3 pacid=42772784 polypeptide=Potri.009G002900.3.p locus=Potri.009G002900 ID=Potri.009G002900.3.v4.1 annot-version=v4.1 MQPNLFPFGSVFGNPFLLNADLGEEGVRFGFESSRLFFLVPFLLLQGGGGGGGGGGDSGGMDLSKVGEKILSSVRSARSLGLLPPTVDRPEVPARAAAAA AAARVLAGMPPHQRFNLPSSSEELRSIYGSRIQGHMVEELEEDFYEEDFDPVRHILEHVPSEENELMYFEEQATLRIAQLDRVAERLSHHVMEHHEVMVK GMNLVREVEKDLKVANVICMNGRRHLTSSMNEVSRDLVVNSNSKKKQALLDMLPVLTELRRALDMQIALESLVEEGNYCKAFQVLSEYLQLLDSFSGLSA IQEMSRGVEVWLGRTLQKLDALLLGVCEEFKEESYITVVDAYALIGDISGLAEKLQSFFMQEVLSESHSVLKIIVHEDLEIQMQNNRLTYSDLCHQIPES KFRTCLLRTLAILFRLMCSYHEIMNFQLESKDLVFQTSDMKQDSLGSNGSPQSVDGMLGSSSIEESTTTSMYQDCNFDVDETKSNGGEAPSSESPWYHLR KEATTFVSQTLQRGRKNLWQLTTSRVSVLLSSAVFSSMSVHQFLKNYDDLNVFILAGEAFCGVEAIEFRQKLKAVCENYLLAFHRQNIHALKMVLEKESW LKLPPDTVQAISFAGLVGDGAALIVPSHDNSSNAKLHHSNKSVKSVDANSKKSGFSSWIRSGNPFSPKLIPTSVDGHSSSLLNGATAVEYDEHANDTVSP QGNGASHKNGMPVSEDENEDLLADFIDEDSQLPSRISKPKAPKSNSSHCKTDEISAQTGSSLCLLRSMDKYARFMQKLEIVNVEVFKGICQLFEIFFYFV FETFAQQTSNSSGKSDSLKYRLKTAISRITQDCDQWIKPQLTPVSSSSPTSSSTHIHGDVTPASPSNHLLATSFGLKERCAAADAISLVAQILHRSKTHL QSMLLQNNPAIVEDFFVILVDSVPDLTEHIHRTTARLLLHINGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDRLLEYGLEI VAETLIEGLSRVKRCSNEGRALMSLDLQVLINGLQHFVHVNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYRKNQIVGLINLVATMKGWKRKTRLEVI EKIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27900			unknown protein		Potri.009G002900 [exp]	0	1
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	2.44	0.8069
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	4.58	0.7979
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	6.63	0.8069
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	9.00	0.7579
AT3G07530			unknown protein		Potri.004G236000 [exp]	9.21	0.7313
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	9.89	0.7669
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	11.74	0.7716
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G080000 [exp]	11.83	0.7040
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	15.09	0.7913
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	16.43	0.7402

Compare expression of checked genes

Potri.009G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.