Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27920 589 / 0 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT5G22980 119 / 5e-29 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G10410 118 / 2e-28 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 116 / 8e-28 SCPL48 serine carboxypeptidase-like 48 (.1) AT1G15000 100 / 2e-22 SCPL50 serine carboxypeptidase-like 50 (.1) AT4G30810 82 / 2e-16 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G52010 76 / 1e-14 SCPL37 serine carboxypeptidase-like 37 (.1) AT1G28110 74 / 6e-14 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT3G52000 72 / 2e-13 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G07990 70 / 1e-12 SCPL27 serine carboxypeptidase-like 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119300 [exp] 563 / 0 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.008G034800 [exp] 115 / 1e-27 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 112 / 2e-26 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 111 / 4e-26 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 107 / 4e-25 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 104 / 7e-24 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 101 / 6e-23 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.018G103100 [exp] 96 / 4e-21 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.012G105500 [exp] 88 / 2e-18 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041352 [exp] 597 / 0 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10036578 [exp] 588 / 0 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10035555 [exp] 523 / 0 AT2G27920 492 / 1e-172 serine carboxypeptidase-like 51 (.1.2.3) Lus10027734 [exp] 515 / 0 AT2G27920 489 / 2e-171 serine carboxypeptidase-like 51 (.1.2.3) Lus10041339 [exp] 123 / 4e-30 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 110 / 6e-26 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 106 / 1e-24 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10037958 [exp] 105 / 3e-24 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 105 / 4e-24 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041000 [exp] 94 / 2e-20 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.009G003100.1 pacid=42772358 polypeptide=Potri.009G003100.1.p locus=Potri.009G003100 ID=Potri.009G003100.1.v4.1 annot-version=v4.1 ATGGGAAAGCTGTGTTTTTTTCTTCTGTCTGTTGTGTTCTTGGTTTCTTTGCTTAATGGAGAAACAGTCACTGCCGCTTCAAGAAAAAAGGTAGCCACTG GTGTAAGAACCCGTGATGGATCAGAAGAATGGGGATATGTAGAAGTTAGACCAAGAGCACACATGTTTTGGTGGCTTTATAGGAGTCCTTACAGAGTTGA AGATTCATCCAAACCATGGCCAATCATTCTTTGGTTGCAGGGTGGACCTGGAGGATCAGGTGTTGGGATGGGAAATTTTGAAGAAATTGGGCCGCTGGAT ACCTATCTGAAGCCCCGGAATTCGACATGGTTACAGGTGGCTGATCTGCTCTTTGTGGATAATCCAGTTGGCACAGGATACAGTTTTGTGGAAGAGGGTG ATGCAGACTTGTTTGTCAAAACTGATGACGAGGCAGCAAGTGATCTAACTACTCTGTTGGAGAAAGTATTTAACAGGAATGAGAGCCTTCAGAAGAGTCC TTTGTATATTGTAGCAGAGTCTTATGGAGGCAAATTTGCTGTCACCCTTGGTTTATCAGCTCTAAAAGCAATTGAAGCAGGAAAACTGAAACTTATACTT GGAGGAGTAGCGTTGGGTGACACTTGGATCTCACCAGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTAAAAGATTTGTCGAGGCTCGACAACAACGGAC TTCAGAAGGCAAACAGCCTGGCTGAGAAGATTAGGCAGCAAATCAGCGAAGGTCAGTATGTTGACGCAACAAATTCTTGGTCTGAGCTTGAGGGAGTGAT TAGTGCTAACAGCAATTCTGTGGATTTCTATAATTTTTTATTGGATTCGGGATCGGACCCTTTATCTCTAACTACAGCTGCGGCTGAATTATCGCAAAAA AATGCAATGAAGAGCTACTCGAGGTATATCAGCTCTCTGAGGTCAGCACTTCCAGGAGGTGGTGTCGGTGATCTTGATAGCATAATGAATGGGGTCATTA AGAGAAAGCTTAAGATAATCCCAGCTAATTTCTCATGGGGAGAGCAGTCCTCTAACGTTTTCAACCAGATGGTAGGCGATTTTATGAGACCGAGAATTAA TGAGGTTGATGAACTCCTAGCTAAGGGAGTGAATGTGACTATATACAATGGGCAGCTTGATCTCATTTGTTCAACCAAGGGAACCGAAGCATGGGTTGAA AAACTCAAGTGGGAAGGGCTCCATAGTTTTTTGAGCATGAACAGAACTCCTCTTCTTTGCGGTGCAGAAGGACAGCTCACAAAAGGATTTACCAGGTCGT ACAAAAACCTGAACTTCTTCTGGATTCTTGGGGCAGGCCACTTTGTACCAGTAGACCAACCCTGCATTGCATTAAAAATGGTGGGGCAAATCACACAGTC ACCAGCAGCAGATGCAGCTGCTTCTGCAAAGAAAGACCAGAAGAGCAAGCATGAAATGAGAAAAGTTTGGTGA
AA sequence Show only first row Show all	>Potri.009G003100.1 pacid=42772358 polypeptide=Potri.009G003100.1.p locus=Potri.009G003100 ID=Potri.009G003100.1.v4.1 annot-version=v4.1 MGKLCFFLLSVVFLVSLLNGETVTAASRKKVATGVRTRDGSEEWGYVEVRPRAHMFWWLYRSPYRVEDSSKPWPIILWLQGGPGGSGVGMGNFEEIGPLD TYLKPRNSTWLQVADLLFVDNPVGTGYSFVEEGDADLFVKTDDEAASDLTTLLEKVFNRNESLQKSPLYIVAESYGGKFAVTLGLSALKAIEAGKLKLIL GGVALGDTWISPEDFVLSWGPLLKDLSRLDNNGLQKANSLAEKIRQQISEGQYVDATNSWSELEGVISANSNSVDFYNFLLDSGSDPLSLTTAAAELSQK NAMKSYSRYISSLRSALPGGGVGDLDSIMNGVIKRKLKIIPANFSWGEQSSNVFNQMVGDFMRPRINEVDELLAKGVNVTIYNGQLDLICSTKGTEAWVE KLKWEGLHSFLSMNRTPLLCGAEGQLTKGFTRSYKNLNFFWILGAGHFVPVDQPCIALKMVGQITQSPAADAAASAKKDQKSKHEMRKVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.009G003100 [exp]	0	1
AT5G66120			3-dehydroquinate synthase, put...		Potri.005G110900 [exp]	1.41	0.8547
					Potri.018G076150 [exp]	6.63	0.7809
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237800 [exp]	6.92	0.8425
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Potri.015G049100 [exp]	8.00	0.8208
AT1G11860			Glycine cleavage T-protein fam...		Potri.004G009600 [exp]	8.54	0.8572	GDCST.2
AT1G17120		CAT8	cationic amino acid transporte...		Potri.001G378500 [exp]	14.38	0.8459	Pt-CAT8.3
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	15.29	0.7964
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Potri.001G114300 [exp]	17.66	0.7859
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	18.30	0.8318
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Potri.001G190800 [exp]	23.68	0.8129	Pt-PRO1.1

Compare expression of checked genes

Potri.009G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.