Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39990 448 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 442 / 2e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 413 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 395 / 3e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 378 / 3e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 366 / 1e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 359 / 8e-122 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 360 / 2e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 342 / 8e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 310 / 2e-102 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075600 [exp] 451 / 3e-157 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 434 / 2e-150 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 404 / 1e-138 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 399 / 1e-136 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G145500 [exp] 386 / 1e-131 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 374 / 1e-126 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 369 / 3e-125 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 369 / 7e-125 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 314 / 6e-104 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030084 [exp] 553 / 0 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 546 / 0 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 456 / 7e-159 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 452 / 1e-157 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 401 / 1e-137 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 400 / 4e-137 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 369 / 1e-124 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 358 / 2e-120 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 354 / 6e-119 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 353 / 1e-118 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.009G003300.1 pacid=42771011 polypeptide=Potri.009G003300.1.p locus=Potri.009G003300 ID=Potri.009G003300.1.v4.1 annot-version=v4.1 ATGGAAAACAACAAGTACTTGAAGTTGCTTCTGCAACAAAAGAAACAGAAATGGTTGTTACTGTTAATATTATCTTCAACCATCTTGCTTCTTACTACCA TAGCATCATTCTCATCTTCCCCTCAATTGCTATACAAATCACACGGCAACAAATACCATTTCCAGCAGGTTCCACGCTTTGTGGAACCTAAATTGAAAAA CTCACCTTCTTCTCCCGTACATAAAGTACCCCGCCTTGCCTACTTAATTTCAGGTTCTGCTGGAGATGGAGTGAGCTTGAAACGGGCTTTAAAAGCACTC TACCATCCGAGGAATCAGTATGCTGTGCATTTGGACTTGGAGGCCACCGCGGAGGAGAGGTTGGAGCTGGCGAGATGGGTGAGTGAGGAGAAGGTTTTCG AGGAGGTGGGAAATGTGAGGGTGGTTGTGAGATCCAATTTGGTAACTTATAGAGGTCTAACTATGGTTAGCAATACGCTTCATGCTGCTGCAATTTTGCT CAAGGATATTGATGATGGGGAATCTTGGGATTGGTTTATCAATTTGAGCGCTTCTGATTATCCTTTGATGACTCAAGATGATATTCTTCATACACTCTTT GATATTCCAAGAGACCTTAACTTCATCGAGCATACCAGTGACATTGGATGGAAAAAAGATCAAAGAGCCAAGCCTGTCATAATAGACCCAGGGCTATATA GCCAGCCAAAATCAGAGGTTTTTTGGATCTCGGAGAAAAGGAGGTTGCCAACAGCATATAATTTGTTTACTGGTTCTGCTTGGATGATGCTCTCTCGACC TTTTGTGGAGTATTGCCTGTGGGGCTGGGACAACCTCCCAAGGATAGTCCTCATGTACTATGCAAACTTTCTCTCTTCACCTGAGGGGTATTTCCACACT GTAATCTGCAATGCTGATGAGTTCCGAAACACTACTGTTAACCATGACCTTCATTTCATATCTTGGGACAACCCTCCTAAGCAACACCCTCATTTTCTTA CAGTAGATGATTATGAGAGCATGGTTGAGAGCAATGTTCCCTTTGCAAGGAAATTTGGCAAGGACGACCCGGTTCTTGACAAGATTGATTCTAACCTTCT GGGACGCAGAGCCGATGGGTTTGTGCCTGGTGGATGGTTCACTGATGAAGGAAATGCAAGTACAGTTCTCCCTCGTATTAATTTAAAGAACACGACTGAG CTTAAGCCTGGCCCTGGTGCTCAGAGGCTCAAGCGCCTGATGAGCAGTTTATTGTTAGCGGATGATTTTGACTCGACACACTGCAAAATGATGCCAGCTG TTTCGAAGATGAAATAG
AA sequence Show only first row Show all	>Potri.009G003300.1 pacid=42771011 polypeptide=Potri.009G003300.1.p locus=Potri.009G003300 ID=Potri.009G003300.1.v4.1 annot-version=v4.1 MENNKYLKLLLQQKKQKWLLLLILSSTILLLTTIASFSSSPQLLYKSHGNKYHFQQVPRFVEPKLKNSPSSPVHKVPRLAYLISGSAGDGVSLKRALKAL YHPRNQYAVHLDLEATAEERLELARWVSEEKVFEEVGNVRVVVRSNLVTYRGLTMVSNTLHAAAILLKDIDDGESWDWFINLSASDYPLMTQDDILHTLF DIPRDLNFIEHTSDIGWKKDQRAKPVIIDPGLYSQPKSEVFWISEKRRLPTAYNLFTGSAWMMLSRPFVEYCLWGWDNLPRIVLMYYANFLSSPEGYFHT VICNADEFRNTTVNHDLHFISWDNPPKQHPHFLTVDDYESMVESNVPFARKFGKDDPVLDKIDSNLLGRRADGFVPGGWFTDEGNASTVLPRINLKNTTE LKPGPGAQRLKRLMSSLLLADDFDSTHCKMMPAVSKMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	0	1
AT1G74840	MYB		Homeodomain-like superfamily p...		Potri.012G073900 [exp]	2.00	0.8646
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	4.47	0.8629
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Potri.005G152100 [exp]	6.00	0.8570
AT3G52040			unknown protein		Potri.009G056800 [exp]	7.07	0.8559
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.012G056000 [exp]	8.83	0.8547
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	11.09	0.8571
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	12.40	0.8264
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124400 [exp]	15.87	0.8131
					Potri.019G014394 [exp]	23.87	0.8273
					Potri.003G101700 [exp]	24.65	0.8169

Compare expression of checked genes

Potri.009G003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.