Plant FIBer expression Database

Potri.009G003500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27950 578 / 0 Ring/U-Box superfamily protein (.1)
AT5G04460 260 / 3e-74 RING/U-box superfamily protein (.1.2.3)
AT2G34920 75 / 1e-13 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
AT1G30860 71 / 3e-12 RING/U-box superfamily protein (.1)
AT4G20160 47 / 9e-05 unknown protein
AT5G19080 46 / 9e-05 RING/U-box superfamily protein (.1)
AT3G06140 45 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G217700
[exp]
1280 / 0 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1)
Potri.008G030100
[exp]
303 / 8e-90 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3)
Potri.010G231100
[exp]
300 / 5e-89 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3)
Potri.003G156400
[exp]
94 / 2e-19 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Potri.001G074800
[exp]
91 / 2e-18 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1)
Potri.008G202700
[exp]
47 / 3e-05 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1)
Potri.010G030600
[exp]
47 / 4e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
Potri.005G036400
[exp]
47 / 5e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1)
Potri.013G025400
[exp]
46 / 0.0001 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021403
[exp]
680 / 0 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1)
Lus10016162
[exp]
345 / 5e-110 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1)
Lus10037928
[exp]
288 / 3e-84 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3)
Lus10038656
[exp]
283 / 1e-82 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3)
Lus10017455
[exp]
254 / 1e-72 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3)
Lus10028827
[exp]
248 / 3e-70 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3)
Lus10038389
[exp]
56 / 1e-07 AT4G20160 155 / 2e-40 unknown protein
Lus10036249
[exp]
54 / 4e-07 AT4G20160 182 / 3e-48 unknown protein
Lus10004419
[exp]
49 / 2e-05 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
Lus10034030
[exp]
49 / 2e-05 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence
>Potri.009G003500.4 pacid=42770764 polypeptide=Potri.009G003500.4.p locus=Potri.009G003500 ID=Potri.009G003500.4.v4.1 annot-version=v4.1
ATGGCTGTTGCTAGTGTACACAATGTTTCTGTGCTTGATTCTTCTTTCCTTAGGGAATCTCAATCAGAGGCAGTGAGAAGATGGGGTGATGATGGGAGGG
CAAGCAACCAGACATCGTCACACCTGCAAACAGAGAGGGAGCTTGAGGATGAGCATGTGGTGAGTCATGTCCAGGGGAGGGTTACTGATAGATTGGTCCA
ATGTCAGAGTGACGGATCGAGTACTGATCTATTGAGGGTGGATGCATCTGATAGCCACAGCAATGACCAAAGTGGGTCTTCAGAGGGTGGGAGTGCTGGG
GAGAGTGAGTGTGGACAATGGCCCCCATCTCCAATTGGATTGGAGAATGGACAGGAGGATTCTTCTGATCTAGGAGCGGTTGAAAGGGTGAGGGTAAGGC
AGATTTTTCAGGAATGGATGGATTGTGGTGCAAGGGAATGTACATCCAGCATTTCCCAAAGGAACAGTGGTTCTAGAGCAGAATGGCTTGGTGAAACTGA
GCAGGAAAGGGTAAGAATTATAAGGGAGTGGGTACAAATGAACAGCCGGCAGAGAGGTGCTTGTGTTGATCGCAGAGAAGAAAAAGGTGCTGAAGTTGCT
GGTCAAATTGAACAAGTTCTTGATGGATTGGTTGTTAACCACAATGAAGGCCGAACTGAGCATACTCGGAGGGGTATTCGCAGATTGTGTGGCAGACAGG
CTTTGCTTGATATGCTTAAGAAGGCTGAGAGAGAAAGGCAAAGTGAGCTTCAAGGTTTGTTGGAGCATCGCGCTGTAACAAAATTTGCTCATCGAAACCG
CATTCAGTCATTACTTCGAGGCAGTTTCTTGCGAAATGACAGAATTGTTGAAGATGAGAGACCCACATCCACAGCAGCAAGCGAATTGGGTTTATTGAGG
CAAAGACATACGGTATCTGATCTCAGGGAAGGATTTTTCTCAAGATTTGACCATTCTGTTTGCAGACAACTAAGCAGAAATGTCAACGATACCTCATCTA
ACATTGACGTTAATGGTAATAGAAGTGAACAAATCAAAGCAAAAAACTCACAACAGGTCATAAATGAATTTTATGAACAAACTGAGTCAAATTCTGAGGA
AAATGGTAGCCTTGGGTTAATGGATAGTAGAACTGATATAGAAGATAACAATGTTGATGATGCAAGTTGGCAAGAAATTACTGCTCATTTAGAAGAGGGG
CCAAGACAAGTTTCAGACTCTAATGCGAGAGACAGGCAACAGTTAGCCAACATTGCATTTGTTGAAAGGAGGGATGGTACTAGAGAAGAGGCTAATGGAA
ACCAGCGGGAAGGTACTAATGGCGAATCATCCCAAGAAACTATGGGAAATGAAGTTGAGGAGAACAAGCAGCTGCTATCAACAAGGGAAGTATTTTCTCA
GCAATCCGAGGTAGATAGAGGGGGAAGTGCTGTCTCCTTGTTATCCAATCATTTGAGTGATTTGGAAGCCACTGTAAATGAAGATGTAAATTGGCATGAA
TCTGCTGAACCATTAGAACAGTGGCAGAACCAACTCCTGGAAAGTGAAGGGCAGCACTTGTTTGGAGCTAGTCGAGCATCTGGAGAATGGGCAGATGGGG
TTCAAGATAACATTGATGGACGTCAACATGAAACTGCTGCTAATGAATGGTTGGAAAATGTAGATAGAGAAGGGGCCTCTGAAGTTTGGCTTGAGGATGG
TGGTTTTCAAGAGACTCTGCAAAGTTGGCTAACAGAGCCTTCTGACCAGGAAGCTATATCAGTTGGTAGGATGGATCCATTTTATTTTTCTGATGATGAC
AATGTATACAGTATGGAGCTCAGGGAACTCTTGAGCAGGAGAAGCGTCTCTACACTTCTTCGCAGTGGTTTCCGTGAGAGTCTTGACCAATTGGTACGCT
CATATGTTGAAAGGCAAAGCCATACTCCCCTAGAATGGGAACTGCAAGAAACATCAGCTATCCCCGCATCAGCAGAACAAGATCTGGAGCAGCAGACTGT
GGATCAGAATGAGAGTCAGGGGAATGCTGTTCAGAGTCCTTCACTTGCTCTACCTTCCCCAACTATACCCCCTGTAGAGCAGCTCTGGGATCAGGAGTCA
CACCATTATACTTGGCCACAGCATGACATGCATCTGCGCTTTGGAATTGAATGGGACATCATAAATGATCTAAGGATTGACATGGCTAGGCTCCAACAAA
GAATGAATAACATGCAGGGGATGCTGGAAGCCTGCATGGACATGCAGCTCGAGCTGCAACGGTCAATACAGCAAGAAGTTTCAGCTGCCCTGAATCGCTC
TTCTGATTCACCAGGTGTGTGTGAGAATAGTGTTCCGGAGGATAGATCTAAATGGGATCATGTGAGGAAAGGAATTTGCTGCATATGTTGTGATGGCAGT
ATTGATTCTCTACTGTACAGGTGTGGGCACATGTGCACATGTTCGAAATGTGCTCATGAGTTGGTCCGAAGCGGGGAGAAATGTCCAATGTGTAGGGCAC
CTGTAATTGAGGTTATCCATGCCTACTCTATCTTATAA
AA sequence
>Potri.009G003500.4 pacid=42770764 polypeptide=Potri.009G003500.4.p locus=Potri.009G003500 ID=Potri.009G003500.4.v4.1 annot-version=v4.1
MAVASVHNVSVLDSSFLRESQSEAVRRWGDDGRASNQTSSHLQTERELEDEHVVSHVQGRVTDRLVQCQSDGSSTDLLRVDASDSHSNDQSGSSEGGSAG
ESECGQWPPSPIGLENGQEDSSDLGAVERVRVRQIFQEWMDCGARECTSSISQRNSGSRAEWLGETEQERVRIIREWVQMNSRQRGACVDRREEKGAEVA
GQIEQVLDGLVVNHNEGRTEHTRRGIRRLCGRQALLDMLKKAERERQSELQGLLEHRAVTKFAHRNRIQSLLRGSFLRNDRIVEDERPTSTAASELGLLR
QRHTVSDLREGFFSRFDHSVCRQLSRNVNDTSSNIDVNGNRSEQIKAKNSQQVINEFYEQTESNSEENGSLGLMDSRTDIEDNNVDDASWQEITAHLEEG
PRQVSDSNARDRQQLANIAFVERRDGTREEANGNQREGTNGESSQETMGNEVEENKQLLSTREVFSQQSEVDRGGSAVSLLSNHLSDLEATVNEDVNWHE
SAEPLEQWQNQLLESEGQHLFGASRASGEWADGVQDNIDGRQHETAANEWLENVDREGASEVWLEDGGFQETLQSWLTEPSDQEAISVGRMDPFYFSDDD
NVYSMELRELLSRRSVSTLLRSGFRESLDQLVRSYVERQSHTPLEWELQETSAIPASAEQDLEQQTVDQNESQGNAVQSPSLALPSPTIPPVEQLWDQES
HHYTWPQHDMHLRFGIEWDIINDLRIDMARLQQRMNNMQGMLEACMDMQLELQRSIQQEVSAALNRSSDSPGVCENSVPEDRSKWDHVRKGICCICCDGS
IDSLLYRCGHMCTCSKCAHELVRSGEKCPMCRAPVIEVIHAYSIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27950 Ring/U-Box superfamily protein... Potri.009G003500
[exp]
0 1
AT2G35330 RING/U-box superfamily protein... Potri.003G090000
[exp]
4.69 0.7642
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.007G035200
[exp]
6.48 0.7832 Pt-XLG.2
AT1G22860 Vacuolar sorting protein 39 (.... Potri.003G148700
[exp]
8.48 0.7680
AT5G04670 Enhancer of polycomb-like tran... Potri.010G235900
[exp]
9.48 0.7674
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.004G078866
[exp]
9.94 0.7327
AT3G22270 Topoisomerase II-associated pr... Potri.016G020100
[exp]
10.00 0.7421
AT2G46020 CHA2, ATBRM, CH... CHROMATIN REMODELING 2, ARABID... Potri.014G086500
[exp]
10.44 0.7934
AT3G48050 SUO 'shuttle' in chinese, BAH doma... Potri.015G072900
[exp]
13.78 0.7923
AT2G41520 TPR15 tetratricopeptide repeat 15, H... Potri.006G047700
[exp]
18.97 0.7650
Potri.002G055950
[exp]
19.49 0.7281

Potri.009G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.