Plant FIBer expression Database

Potri.009G003650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G003650.1 pacid=42771040 polypeptide=Potri.009G003650.1.p locus=Potri.009G003650 ID=Potri.009G003650.1.v4.1 annot-version=v4.1
ATGTTGAGGAGCTATTGGTTTCGCGTGGTGGCTAGTTCGGCTATGTTGTGGGACAGCTGGGTTGGTTCGAGTGGTGGCTGGTCTGTATCATTGGCTGAGG
TCGGTGCTGTCATGGGCGCGGGCTTGGAGGGAGTGGCAACCGTGGGTATTTGTGGGTGGTTGGGGTTACTGTCGTGGGTATCCGTGGAGAAGGAGACGAC
AGTAATGGGTTTTATTTGGGTGATTTGTTGGTTGGGTATGTGTGGTCAAAAGGGAGACTTGATGGTTGTGGGTGAAAGAGAGGTTGATGATGGTGGCAGG
TTCAATGGTAAGAGCAAGGAGGGTGGCTAG
AA sequence
>Potri.009G003650.1 pacid=42771040 polypeptide=Potri.009G003650.1.p locus=Potri.009G003650 ID=Potri.009G003650.1.v4.1 annot-version=v4.1
MLRSYWFRVVASSAMLWDSWVGSSGGWSVSLAEVGAVMGAGLEGVATVGICGWLGLLSWVSVEKETTVMGFIWVICWLGMCGQKGDLMVVGEREVDDGGR
FNGKSKEGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G003650
[exp]
0 1
AT1G52080 AR791 actin binding protein family (... Potri.001G191300
[exp]
1.00 0.8490
AT3G07300 NagB/RpiA/CoA transferase-like... Potri.001G026100
[exp]
4.89 0.7990
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.004G090766
[exp]
8.94 0.8316
AT1G69490 NAC NAP, ANAC029, A... Arabidopsis NAC domain contain... Potri.016G088300
[exp]
16.06 0.7138
AT5G20260 Exostosin family protein (.1) Potri.006G064900
[exp]
16.73 0.7730
AT4G39100 SHL1 short life, PHD finger family ... Potri.009G121000
[exp]
21.93 0.7965 SHL1.1
Potri.001G382300
[exp]
25.00 0.7678
Potri.008G206100
[exp]
28.14 0.7782
AT5G39785 Protein of unknown function (D... Potri.017G082300
[exp]
31.43 0.7677
AT5G61230 PIA2, ANK6 phytochrome interacting ankyri... Potri.001G129800
[exp]
33.00 0.7019

Potri.009G003650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.