Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27980 777 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 558 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 544 / 1e-180 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 466 / 2e-150 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 167 / 5e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 155 / 2e-38 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 154 / 5e-38 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 144 / 7e-35 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 118 / 1e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G58610 107 / 2e-23 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217600 [exp] 1429 / 0 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 644 / 0 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 634 / 0 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 504 / 1e-164 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.010G087700 [exp] 167 / 4e-42 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 167 / 5e-42 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 167 / 5e-42 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 157 / 3e-39 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.005G211100 [exp] 156 / 2e-38 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035553 [exp] 706 / 0 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 694 / 0 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 483 / 1e-156 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 479 / 6e-155 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 456 / 4e-145 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042283 [exp] 183 / 7e-47 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10006110 [exp] 166 / 2e-41 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 160 / 1e-39 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 159 / 2e-39 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 154 / 4e-38 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G003900.2 pacid=42772895 polypeptide=Potri.009G003900.2.p locus=Potri.009G003900 ID=Potri.009G003900.2.v4.1 annot-version=v4.1 ATGGCAAACGGTACGGATGCCAAGGATGCGGCAGTGGCAAAGGTCCGACCAGGTCACAAACGAGAGTTTGAGTTTGCTTTCAGGGCCCATTCTGAGATCT GTGGGTCTCTGGGCCGAACCCGGTCCTCTCGGGTCTCCTCTTCTCCAGGCAACAATGGAAGTAACGGTAACAACAGTAAGAAGTTGAAGTCTTCTGGCAG GAAAAAAGGTGGTCTGTTAGAAAAGGGCGAGGAGGTTGCTGTTATTGATTTGGAGGAGGCAAGGGTTGAATCCTTGGCTCCCTTATTGAACAACTATGGT GATGGGGAGATTGTGGAAGTGAAGGAATTTGAAGAAGCAAAGGAAAATGAAGTTGAATGTGAAGAAAAGAATAATGGGCTGGTGCCGGTTTTGATGGATG GGGTCATGGCAGAAAGTGGGGTTATAGAAAACAAGGGTGGTGGTGAAGTAAAGGAGGGTGATAAGGTTCATGCATGTGAGGAAGGGTCTAGTGGGTTAGT TTTGATTGATGAAGATTCAAAGCCGACGGTGAATAGGGTCTTAGAGAGCAAGAGTGGCTGTGAATTGAAGAAGGATGATGCATGCGAGGAAGGGACTAGT GGGTTGTCCTCGGTTTCGGTTAAAAATGACGAGGGAGGATATGTTAATGCGTCATTCCAGCCAGTTGTAGTTAATGGTGATAGTAAATGTAAGGTGGAAG AAGAAAAACCTTTTAGGAGGTTTACCAGGTCAGCATTGAAGCCGAAGATAGAGCCTTTGGATATATCCTCCTCTGACGGGGTTAAAGTTGATGACACAGG CAGTTCATCTGTTGCTGCTATTACGACCACACCTACGAAGATGTTTGCCATTGATGGATTGAAGAAGTTCCCAACAAAGTTGAAGGATCTTCTTGATTCA GGCATACTCGAGGGACAAAAGGTGAAGTATTTGCGAGGTCCCAAGGTAAGAGGTCCTGGAGAGAAGGGGTTGCATGGGGTGGTCAAGGAATCGGGAATTT TGTGTTTCTGCGATGATTGCAAAGGAAAGGAAGTTGTTACTCCTACTATTTTTGAGCTGCATGCGGGCAGTGCAAATAAACGCCCACCAGAGTATATTTT CCTGGAGAATGGAAATACACTCCGAGATGTAATGAATGCATGCAAGAATTCTTCGTTGGATATATTGGATGAAGCTATTCGGCTTTCTATTGGCTTTACA CCTTCCAAGAAATCTAATTTCTGTCTGAGCTGCAGAGGGTCAATTACAGGGGCTGGCACCAGGAAATCAAAGGTATTGTGCAGTCAGTGCTTGGAATTGA AAGATTCACAAGCTATCTTAGCACCAGAAACAGATACAAAAGAAAGAACACCAAGACCATCTCCAGTTCCAGAGTCATCTAGCGCTTTGTTGAAGTCTAG CCCATCACGGAGCAATAGTCAAGGGAGACTTACAAAAAAAGATATTCGAATGCATAAGCTAGTTTTTGAAGAAGAGGTCCTGCCAGATGGAACTGAAGTT GGATATTACTCTCAAGGAAAGAAATTGCTGGTAGGCTACAAGAAGGGATTTGGGATTTTCTGTTCATGCTGCAATACTGAGGTTAGCCCTTCTCAATTTG AAGCTCATGCTGGTTGGGCATCACGTCGAAAACCTTACCTACACATTTACACATCCAATGGCGTGTCTCTTCATGAATTAGCAATATCTCTATCAAAATG TCGGAGGCACTCTACCAAGGAGAATGATGACCTGTGCCAGATCTGTAGAGATGGTGGGAAACTATTGTGTTGTGATGTATGCCCAAGAGCTTTTCACCAA GAATGCCTTTCTCTACCTTCAATTCCTAAGGGTAAATGGTACTGCAAATATTGCCTGAATACTTTTGAGAAAGAAAAATTTGTGGAGCGGAATGCCAATG CAATAGCGGCAGGAAGGGTTGCAGGAACTGATCCAATAGAACAAATAACCAGGCGATGCATTCGTATTGTCAAAACTTTTGAGGCTGAAGTTGGTGGATG TGTTTTCTGCAGAGGTCATGATTTTGAAAGAACTTTTGGTCCTCGCACTGTGATTATCTGTGATCAGTGTGAGAAGGAGTTCCATGTTGGCTGTTTAAAG GAACATCAGATGCAAGATCTGAAGGAGTTGCCTACAGGAAAGTGGTTCTGTTGCACTGGATGTGAAAGAATTCATTCTGCTTTGCAGAAATTGGTTATCC GTGGGGAAGAGAAGCTTCCTGATTCTTCCCTGAATTTTATAAAGAAGAAGCACGAGGAAAGTGCCTCGGAGAGTGGTGGTGGGGATGATATAAGATGGAG GCTTCTTAGTAAGAAAACAGATCCTTCTGATGTTACTGAATCCCTACTGTCTGAGGCTGTTGCCATTTTCCATGAGCGCTTTGCTCCAATAACTGTGGAT AAGTCCAAACGTAAACGTGATGACCATGACTTCATTCCGTCCATGGTTAAAGGCGGGGACATGAAAGGGCAGGATCTAGGTGGCATGTACTGTGCTGTAT TGCTGGTTAACCATGAGGTAGTGTCAGCGGCAGTCATGAGAATTTTTGGCCAGGAACTGGCTGAGCTGCCTATAGTTGCAACAAGTAGCAAATCGCAAGG ACAGGGTTATTTTCAGACATTGTTTACTTGTATTGAAAAGCTACTAGGGTTTCTCAATGTGAAGAATCTTGTACTTCCTGCAGCTGAAGAAGTTGAATCT ATTTGGACAAACAAATTTGGGTTTAGCACGATAACTCAAGATGAGCTGATGGAATACAGGAAAAGTTATCAGATAATGGAGTTTCAAGGGTCGCTAATGC TGCAAAAGCCGGTTCCCAAGTGCCGAGTTGTCGGTAAATCAGAAGGCGGCTGA
AA sequence Show only first row Show all	>Potri.009G003900.2 pacid=42772895 polypeptide=Potri.009G003900.2.p locus=Potri.009G003900 ID=Potri.009G003900.2.v4.1 annot-version=v4.1 MANGTDAKDAAVAKVRPGHKREFEFAFRAHSEICGSLGRTRSSRVSSSPGNNGSNGNNSKKLKSSGRKKGGLLEKGEEVAVIDLEEARVESLAPLLNNYG DGEIVEVKEFEEAKENEVECEEKNNGLVPVLMDGVMAESGVIENKGGGEVKEGDKVHACEEGSSGLVLIDEDSKPTVNRVLESKSGCELKKDDACEEGTS GLSSVSVKNDEGGYVNASFQPVVVNGDSKCKVEEEKPFRRFTRSALKPKIEPLDISSSDGVKVDDTGSSSVAAITTTPTKMFAIDGLKKFPTKLKDLLDS GILEGQKVKYLRGPKVRGPGEKGLHGVVKESGILCFCDDCKGKEVVTPTIFELHAGSANKRPPEYIFLENGNTLRDVMNACKNSSLDILDEAIRLSIGFT PSKKSNFCLSCRGSITGAGTRKSKVLCSQCLELKDSQAILAPETDTKERTPRPSPVPESSSALLKSSPSRSNSQGRLTKKDIRMHKLVFEEEVLPDGTEV GYYSQGKKLLVGYKKGFGIFCSCCNTEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELAISLSKCRRHSTKENDDLCQICRDGGKLLCCDVCPRAFHQ ECLSLPSIPKGKWYCKYCLNTFEKEKFVERNANAIAAGRVAGTDPIEQITRRCIRIVKTFEAEVGGCVFCRGHDFERTFGPRTVIICDQCEKEFHVGCLK EHQMQDLKELPTGKWFCCTGCERIHSALQKLVIRGEEKLPDSSLNFIKKKHEESASESGGGDDIRWRLLSKKTDPSDVTESLLSEAVAIFHERFAPITVD KSKRKRDDHDFIPSMVKGGDMKGQDLGGMYCAVLLVNHEVVSAAVMRIFGQELAELPIVATSSKSQGQGYFQTLFTCIEKLLGFLNVKNLVLPAAEEVES IWTNKFGFSTITQDELMEYRKSYQIMEFQGSLMLQKPVPKCRVVGKSEGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	0	1
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	1.73	0.9312
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	3.31	0.8758
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	4.47	0.8527
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	4.89	0.9054
					Potri.008G016200 [exp]	4.89	0.8984
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	5.47	0.8820
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	6.00	0.8890
AT3G58110			unknown protein		Potri.013G119700 [exp]	6.32	0.8772
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	6.70	0.8600
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	7.07	0.8871

Compare expression of checked genes

Potri.009G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.