Plant FIBer expression Database

Potri.009G004400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37608 77 / 5e-20 unknown protein
AT2G23040 45 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G004400.2 pacid=42772761 polypeptide=Potri.009G004400.2.p locus=Potri.009G004400 ID=Potri.009G004400.2.v4.1 annot-version=v4.1
ATGGATCCTCGATACACTGGAGAGATACTCAAGCATTTAGAGAAGCAGAATGAGTTATTAACGAGCGCTTATAATTCAATGTCACATGAATTGCACAAGC
TCCAGGTAGAGGAGGAAATGCTGATGCGCAAATTTTATGATCTCATGGCTGCTCAAGGGTTAAGTAAAAAGAAAGAAGGCAGCAACAATGTTTCGGATGG
TGGACGAACAGGACAGTCCACTGCATCACTCCCAAATACTGTTGATATTTCTGATGGTGGCATAGATAGACACCCCAGTGCAGTAGTCCCATTTACAGCT
ACTGATGAACAGATGTGA
AA sequence
>Potri.009G004400.2 pacid=42772761 polypeptide=Potri.009G004400.2.p locus=Potri.009G004400 ID=Potri.009G004400.2.v4.1 annot-version=v4.1
MDPRYTGEILKHLEKQNELLTSAYNSMSHELHKLQVEEEMLMRKFYDLMAAQGLSKKKEGSNNVSDGGRTGQSTASLPNTVDISDGGIDRHPSAVVPFTA
TDEQM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37608 unknown protein Potri.009G004400
[exp]
0 1
AT3G55380 UBC14 ubiquitin-conjugating enzyme 1... Potri.008G053900
[exp]
2.44 0.8528 Pt-UBC7.1
AT5G02780 GSTL1 glutathione transferase lambda... Potri.010G214800
[exp]
7.07 0.8362
AT5G03740 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone... Potri.006G116500
[exp]
7.48 0.8470
AT5G47890 NADH-ubiquinone oxidoreductase... Potri.003G159100
[exp]
8.06 0.8249
AT1G20460 unknown protein Potri.002G013000
[exp]
9.00 0.8055
AT5G55850 NOI RPM1-interacting protein 4 (RI... Potri.011G094200
[exp]
9.64 0.7995
Potri.002G120500
[exp]
12.40 0.8226
Potri.008G035101
[exp]
12.40 0.8337
AT3G62880 ATOEP16-4 Mitochondrial import inner mem... Potri.014G128900
[exp]
15.36 0.7816
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Potri.001G187200
[exp]
15.42 0.8141

Potri.009G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.