Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07960 183 / 3e-60 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT2G47470 71 / 5e-15 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 70 / 1e-14 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 62 / 5e-12 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 56 / 8e-10 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 48 / 6e-07 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT4G27080 43 / 3e-05 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT5G60640 41 / 0.0001 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G35620 40 / 0.0003 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT3G54960 39 / 0.0005 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198300 [exp] 74 / 5e-16 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 71 / 3e-15 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 65 / 5e-13 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.005G179000 [exp] 53 / 1e-08 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 52 / 2e-08 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.013G111400 [exp] 44 / 1e-05 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.005G193400 [exp] 41 / 5e-05 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1) Potri.009G013600 [exp] 42 / 6e-05 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.019G082400 [exp] 41 / 0.0001 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036125 [exp] 203 / 4e-68 AT1G07960 214 / 1e-72 PDI-like 5-1 (.1.2.3) Lus10011641 [exp] 197 / 3e-63 AT1G07960 210 / 6e-68 PDI-like 5-1 (.1.2.3) Lus10036337 [exp] 73 / 8e-16 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 73 / 1e-15 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 64 / 2e-12 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 60 / 3e-11 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 59 / 1e-10 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 58 / 2e-10 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 55 / 3e-09 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 54 / 6e-09 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.009G004500.2 pacid=42772261 polypeptide=Potri.009G004500.2.p locus=Potri.009G004500 ID=Potri.009G004500.2.v4.1 annot-version=v4.1 ATGATAAATCTAAACCGTTCGGTTTCGATTTGGATCGTATTATCATTATTTCTCTCCCTCTTCCTTTCTAAAGCTGAAGTTATAACCCTAACTCCTGAGA CATTCTCTGACAAGGTGAAGGAGAAAGACACGGCATGGTTTGTCAAATTTTGTGTTCCATGGTGTAAGCATTGTAAGAATTTGGGGACCTTGTGGGAAGA GGTTGGGAAGGCAATGGAGGGGGAAGATGAAATAGAGGTTGGAGAAGTGGACTGCGGCGCCAGCAAATCTGTCTGTTCTAAAGCTGATATCCACTCTTAC CCTACTTTTAAGCTCTTTTTTGATGGAGAAGAAGTTGCTAAATATCAAGGGCCAAGAGATGTTGAATCTCTTAAAGCATTCGTTTTAGATGAAGCAGAAA AGGCAGCAGCTAAAGCACAGCTTGGCTATGATAAAGATTTGTGA
AA sequence Show only first row Show all	>Potri.009G004500.2 pacid=42772261 polypeptide=Potri.009G004500.2.p locus=Potri.009G004500 ID=Potri.009G004500.2.v4.1 annot-version=v4.1 MINLNRSVSIWIVLSLFLSLFLSKAEVITLTPETFSDKVKEKDTAWFVKFCVPWCKHCKNLGTLWEEVGKAMEGEDEIEVGEVDCGASKSVCSKADIHSY PTFKLFFDGEEVAKYQGPRDVESLKAFVLDEAEKAAAKAQLGYDKDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Potri.009G004500 [exp]	0	1
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.007G005100 [exp]	3.00	0.8944
AT5G58030			Transport protein particle (TR...		Potri.018G110000 [exp]	4.58	0.8834
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	4.69	0.8624
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.010G069600 [exp]	8.24	0.8804
AT1G26650			unknown protein		Potri.010G163400 [exp]	10.48	0.8295
AT4G30010			unknown protein		Potri.018G142500 [exp]	12.64	0.8675
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	13.03	0.8846	PAG1.2
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	13.11	0.8338
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Potri.007G020400 [exp]	19.74	0.8626
AT5G49540			Rab5-interacting family protei...		Potri.010G148600 [exp]	19.97	0.8685

Compare expression of checked genes

Potri.009G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.