Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021411 [exp] 1122 / 0 ND / Lus10016154 [exp] 768 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10220 [poplar] [flax] Smg8_Smg9 Smg8_Smg9
Representative CDS sequence Show only first row Show all	>Potri.009G005300.1 pacid=42772822 polypeptide=Potri.009G005300.1.p locus=Potri.009G005300 ID=Potri.009G005300.1.v4.1 annot-version=v4.1 ATGGACTCTCGCAACCCGAACCCACCTTGCATGCGGGTCCTAACCCGACCCCCCACACCCACACCTGCACCTGGACCCACACCCACTTCCTCTTCCTCTC CAGATCCCCAACCATCATCCCAGTCCCATCCTCGCTCCCTGGAAGGTGTAGTGGTGGTTGGGTTCCTTTCCCGGAGCCCCGACCACTCTACACACCTTAT CAATCGGATCCTTGACTCCAACGCATTCGGTTCGGGTCATCTCGACAAAACATTGTTTGTGGATAAAGAGGAAGTTAAGGATTGGTTTAAGAAGAGGAAA ATCAGTTATTACCATGAAGAAGAGAAAGGACTCTTGTTCTTGCAGTTTTGCTCGATCCGCTGCCCCATTATTCATGGGTTCTCGAATTCGGGTTTGGAAG AGCTGGAGTTTGAAGAACTTCAGGGTTTGCTCTTCATGTTCTCTGTTTGCCATGTGATACTATATATACAGGAGGGTTCACGTTTTGACACTCATGTTTT GCAAAAGTTTAGGCTTTTACAAGCATCTAAGCATGCACTAACTCCATATGTGAGATCGAGAACTATCCCGCCACTGTCATCTAGGCCTCATTCTTCGTTG TCTTCATCTAGGCTGGCTTCTTCGACTGGTTCTTCTCCGGTTAGAAGTGGTAGTTTCACGAGTCGCAATTCTTCAGCTGTTTCTATTATGTCTGGTTTAG GTTCCTATGTGTCGTTGTTTCCAGGATATTGTACTCCAGTGATGCTCTTTGTATTCGTCGATGATTTCTTGGATGTGCTGAATTCTGGTTCTAGTGTGGA GGAGTCAACTGATAGTTCCTCATTCAATCAATCTTCTGGTTTGAGTAGTGTGGCTAGGTCAAATGCACCTGCAAAAGGTTCTGGTTCAGTTGTTGTGCTA GCACGCCCTGTAAGTAAATCAGAAGGTGGTTTCAGGAAGAAACTGCAGTCATCTCTTGAAGCACAGATTCGTTTTCTGATAAAGAAATGCCGAACACTAT CAGGTTCTGAAAGTGGTCATACTGGTTCGAGAAGTGGGGCTGTTTCAAGTTCTGCACCCTTGTTTTCACTTGACGCATCAAGATCTGTTGTGTTGCTTGA CAGGTCTGCTAATCTGAGGGGTGAATCGTTGGAGTTTGCTACTGATCTCGTGGAAGATATTTTGAATGGAAAAGCAACCCCTGATTCTCTTTTGCTTGAA AGGCATAGTCAGAATGCAAACAAAGAGGACATTTTATCCATAAAGGAGTTCATTTACAGGCAGTCTGATATTTTGAGAGGAAAAGGGGGGTTGGTTACTG GCACAAACAGTGGCTCTGCAGCTGGTGTTGGCATGGTTGCAGTTGCTGCAGCTGCAGCTGCAGCTTCAGCTTCAGCTGGGTCTGGAAAGACATTGACTAC TCCTGAACTTCCAAGTTTGGAAATATGGTTATCATCCAGTCAACTTATTCTAAATGGAATTCTTTCTGCAAAACGCAGTTGTATTGATGAAACTGAAGTT GTTAAAAGGAAACCTCGTCAACGAAACACTGGTTTAGCTCAAGTTGAAGGAACTTCAAGGGTTATGGATCCTCTAGATGTTGCAGTATATTTGCTGGAAA ATAGCAGAGGACTTAACACAAAATTTTCGACTTCGTGGTGTGAAAAAGCTCTTCCAACTGCAAAGAATGAGTATTTGAAGGATTTGCCTGCTTGTTATGC CACTGCACAGCATGAGGCCCATTTAGAAAAAGCATTGCGTGCTTTCCTGTCCATGGTCAGGGGACCTGCAGTTCAACTGTTTGCTAAAAAGCTGGAGGAT GAATGCACATCCATCTGGAAATCTGGGAGGCAGCTATGTGATGCTGTTAGTTTGACGGGGAAACCGTGCATGCACCAGAGACACAATGTCGATACTGGTG AGCCGCATAATGATGCTGCAGCCAAGCCACATTCAAGTGGATACTTTTTCCTTCATGCTTGTGCCTGTGGTCGATCACGTCAACTACTGTCTGACCCTTT TGATTTTGAATCAGCAAATGTATCCTCTAATTGCTTCACAGACTGTGACAAACTCCTTCCTGCCATCCAATTACCTGAGGGCAGCAATATAGGACCGATT CAATCATCTTCATGGAGTTTGATCCGTGTTGCGGGCACAAGGTACTATGAACCTTCTAAGGGCCTCCTGCAGAGCGGGTTCTCTTCTACTCATAAATTTC TTTCAAAAGGGACAATATTTCTAGAGAAACCGACAAACCTAAATGGCCTACCAGCTTCAAATTTGCTGCAAGGTTCTGTAATTAGGTCAAGTTCAGATCC CCAGGTTGAATTTAATGGTGACGTAGATAGAAAGAAAACTGTGTTTTACTCTGCAGATATGGAGACGGGGGTGGAAAATCAAAGAAAACTTTCAGTAAAT AGCAAATTAGATGACAAAAAAATCAGTTTTGGTAGAAATATTCCAAATTTTACAATGAGAAAGCCTTTTTCTGAGGTTGTAGCCGGATCATCAGCTACAG ATTCTGGATTTCCTCCCCTACAGCAGAGGAAACAGCACCCATCAATTTCTGAGAAAGGTTCCAGGAAAAACTGGGCGAGAGATAGGATTGTAGAACAGGT TCATCCTAAAGTTGTTCAAGGATCTCACAAATCTGAAGATATGTCACCTGTTCAAGAAACTTTAAATGGAATGGCTTCTAATGGTGGCCTAGATGGTGAT CCTTTCCTACGAATAGGAAGCAATGTTGTCCCTGTGAATATTAATGGTGCTGAAGTAGTGAAATCTTCCAAGCATGCAATAGTTTATGTTGGTTTTGAGC ATGAGTGCCCCCATGGCCACCGATTCTTATTAAGTTTAGATCATCTCAATGAACTAGGACCTTTGTATTCTTTGCCTGAAGAGTCTCGTGTACCTACTGT GGAAACTTCAGACAATAGTCTGGTTGATCCTTCAAACTCGGGCAGAAACAGTGGCACTGGTAAAGGTCATCGAAGATCAAAGGACATGGCTGTTGCTACT GCAAATAAGTTGAGAAATGCAGATAAGTCAAAGGAGATGGGGGCAAATTGGAATCCATCTATTAATGGGCTGGTAAAGTTCTCTGGTTCAGGGAAGGAAC AGAAACAGACTTCTCTCAATGTTCCAACACGCCCCAATTTTATGAAATGTCTAGAAGCGGACTTTCTTTCTATTAGCCTTGATGATGGTGGAAGTGCTTT CTCCATTTTGAATAGAAATTTACCAATATATATGAATTGCCCTTACTGCCAACTCTCCAAGAACAAGAAGGATCCACCAAAGGTCAAGTTTGCTGGCACA TTATCACAGTTGCAGAGGATTTTTCTGGTAACGCCTCCATTTCCAGTTGTGTTGGCCACATGCCCAGTTATACAATTTGCGGCATCGTGCCTCCCGTCAT CAGTGTCGGACCGTGAGCAAAAGCTGCAGTTCAGCCTCGGATGTCAAGTAGTCCTACCACCAGAGAGTTTCCTTACTCTCAAACTCCCATTTGTGTATGG TGTACAACTAGTGGATGGAAATCCAGTTCCTCTTAATGCTTTTGAATGTCAACCAGAAATGACAGCCTGGATTATGAGGGGCACAGCCCTGCAAGTTGTT TCCAAGGCAAGTAAACTCAGGGAGGGACACCAGAAGTAG
AA sequence Show only first row Show all	>Potri.009G005300.1 pacid=42772822 polypeptide=Potri.009G005300.1.p locus=Potri.009G005300 ID=Potri.009G005300.1.v4.1 annot-version=v4.1 MDSRNPNPPCMRVLTRPPTPTPAPGPTPTSSSSPDPQPSSQSHPRSLEGVVVVGFLSRSPDHSTHLINRILDSNAFGSGHLDKTLFVDKEEVKDWFKKRK ISYYHEEEKGLLFLQFCSIRCPIIHGFSNSGLEELEFEELQGLLFMFSVCHVILYIQEGSRFDTHVLQKFRLLQASKHALTPYVRSRTIPPLSSRPHSSL SSSRLASSTGSSPVRSGSFTSRNSSAVSIMSGLGSYVSLFPGYCTPVMLFVFVDDFLDVLNSGSSVEESTDSSSFNQSSGLSSVARSNAPAKGSGSVVVL ARPVSKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSESGHTGSRSGAVSSSAPLFSLDASRSVVLLDRSANLRGESLEFATDLVEDILNGKATPDSLLLE RHSQNANKEDILSIKEFIYRQSDILRGKGGLVTGTNSGSAAGVGMVAVAAAAAAASASAGSGKTLTTPELPSLEIWLSSSQLILNGILSAKRSCIDETEV VKRKPRQRNTGLAQVEGTSRVMDPLDVAVYLLENSRGLNTKFSTSWCEKALPTAKNEYLKDLPACYATAQHEAHLEKALRAFLSMVRGPAVQLFAKKLED ECTSIWKSGRQLCDAVSLTGKPCMHQRHNVDTGEPHNDAAAKPHSSGYFFLHACACGRSRQLLSDPFDFESANVSSNCFTDCDKLLPAIQLPEGSNIGPI QSSSWSLIRVAGTRYYEPSKGLLQSGFSSTHKFLSKGTIFLEKPTNLNGLPASNLLQGSVIRSSSDPQVEFNGDVDRKKTVFYSADMETGVENQRKLSVN SKLDDKKISFGRNIPNFTMRKPFSEVVAGSSATDSGFPPLQQRKQHPSISEKGSRKNWARDRIVEQVHPKVVQGSHKSEDMSPVQETLNGMASNGGLDGD PFLRIGSNVVPVNINGAEVVKSSKHAIVYVGFEHECPHGHRFLLSLDHLNELGPLYSLPEESRVPTVETSDNSLVDPSNSGRNSGTGKGHRRSKDMAVAT ANKLRNADKSKEMGANWNPSINGLVKFSGSGKEQKQTSLNVPTRPNFMKCLEADFLSISLDDGGSAFSILNRNLPIYMNCPYCQLSKNKKDPPKVKFAGT LSQLQRIFLVTPPFPVVLATCPVIQFAASCLPSSVSDREQKLQFSLGCQVVLPPESFLTLKLPFVYGVQLVDGNPVPLNAFECQPEMTAWIMRGTALQVV SKASKLREGHQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.009G005300 [exp]	0	1
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	4.00	0.8296
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	4.47	0.8295
AT2G28540			RNA binding (RRM/RBD/RNP motif...		Potri.016G084700 [exp]	4.89	0.7995
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	7.14	0.8293
AT3G12590			unknown protein		Potri.008G052700 [exp]	8.24	0.8252
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	10.00	0.8224
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	13.26	0.8031
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	14.07	0.8069
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	14.96	0.8162
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	15.09	0.7860

Compare expression of checked genes

Potri.009G005300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.