Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28160 236 / 8e-76 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G57150 76 / 7e-16 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 74 / 3e-15 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 76 / 6e-15 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 58 / 5e-09 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 56 / 2e-08 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G46760 56 / 2e-08 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 56 / 2e-08 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G10570 55 / 2e-08 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10610 54 / 7e-08 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141800 [exp] 71 / 7e-14 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 70 / 1e-13 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141600 [exp] 68 / 5e-13 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 68 / 5e-13 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G136300 [exp] 69 / 7e-13 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 68 / 8e-13 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G142200 [exp] 64 / 4e-11 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.018G141500 [exp] 60 / 4e-10 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.008G189600 [exp] 61 / 5e-10 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021416 [exp] 199 / 1e-63 AT2G28160 191 / 7e-61 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10016151 [exp] 183 / 5e-55 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10006951 [exp] 66 / 3e-12 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10030880 [exp] 66 / 1e-11 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 64 / 6e-11 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 58 / 1e-09 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10026278 [exp] 57 / 1e-08 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 56 / 2e-08 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 56 / 2e-08 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10042395 [exp] 56 / 3e-08 AT2G16910 323 / 1e-103 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G005600.1 pacid=42771436 polypeptide=Potri.009G005600.1.p locus=Potri.009G005600 ID=Potri.009G005600.1.v4.1 annot-version=v4.1 ATGGCCCTCCCAATTCCCATCAATTTTTACTTGAAAGAGACCTCTCTTTTTCAAGGAATGGATAGGATGGATGATCCAACTGGAAACCCTTTAGCAGCAC AGACTAATTTTCAGTTTCAGTTGCAAGATTTCATTGATGAAGCCAACTTCGATCGATACATTGATCTAATTCGAGGAGAGAATGAAATCACTGCTTTCGA TTGTGATCTTATCAATGGCTTTTTGGTCGATAACCAATTTGGTCTGTCCACAGGAGATAAATTTGATTGTGATCTCATCAACCATGTTCCTACACACACT TCTAGTGCAATGGAACAGGATCCCAATTACGTCCCCATTGCATTGCCGAGTTTTGACGGGGACATGGGATTAGAGGCTGAAGAAGATACTGATGAGGAAG ACTCTTCTGGAACCGCCACAACGACTAAGAAGACGAAGAAGGATCGATCAAGGACATTGATTTCGGAGCGAAGGAGGAGGGGTAGGATGAAGGAGAAGCT CTATGCTTTGCGGTCCTTGGTTCCTAATATAACTAAGATGGACAAGGCCTCCATAATTGGGGATGCCGTATTATTTGTGCAAGAGCTGCAAATGCAAGCC AATAAGCTAAAAGCTGATATTGCCAGCCTTGAATCATCCTTAATAGGATCAGATAGATATCAAGGGTCAAATAGAAATCCAAAGAATCTTCAAAATACAA GTAACAACCATCCAATTCGCAAGAAGATCATCAAGATGGATGTGTTTCAAGTGGAAGAAAGAGGGTTTTACGTGAGATTGGTGTGCAACAAGGGAGAAGG CGTTGCACCCTCGCTCTATAGGGCTCTCGAGTCCCTTACAAGCTTCAGTGTTCAAAACTCAAACTTGGCTACAACTTCTGAGGGGTTTGTATTAACATTT ACTTTAAATGTTAAAGAAAGTGAGCAGGACATGAACTTGCCAAATTTGAAGCTATGGGTTACTGGGGCTCTTTTGAATCAAGGATTTGAACTGTTAACGG CTTAA
AA sequence Show only first row Show all	>Potri.009G005600.1 pacid=42771436 polypeptide=Potri.009G005600.1.p locus=Potri.009G005600 ID=Potri.009G005600.1.v4.1 annot-version=v4.1 MALPIPINFYLKETSLFQGMDRMDDPTGNPLAAQTNFQFQLQDFIDEANFDRYIDLIRGENEITAFDCDLINGFLVDNQFGLSTGDKFDCDLINHVPTHT SSAMEQDPNYVPIALPSFDGDMGLEAEEDTDEEDSSGTATTTKKTKKDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVLFVQELQMQA NKLKADIASLESSLIGSDRYQGSNRNPKNLQNTSNNHPIRKKIIKMDVFQVEERGFYVRLVCNKGEGVAPSLYRALESLTSFSVQNSNLATTSEGFVLTF TLNVKESEQDMNLPNLKLWVTGALLNQGFELLTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	0	1
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	1.00	0.9903
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.001G266900 [exp]	4.58	0.9674	Pt-FRD3.2
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134501 [exp]	4.69	0.9734
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	6.00	0.9847
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	6.32	0.9841
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	7.34	0.9793
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.005G250500 [exp]	7.87	0.9622
AT5G04950		ATNAS1	ARABIDOPSIS THALIANA NICOTIANA...		Potri.004G193400 [exp]	8.36	0.9822
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	13.41	0.9753
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	13.49	0.9724

Compare expression of checked genes

Potri.009G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.