Plant FIBer expression Database

Potri.009G005900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08130 1074 / 0 ATLIG1 DNA ligase 1 (.1)
AT1G49250 822 / 0 ATP-dependent DNA ligase (.1)
AT1G66730 492 / 2e-156 AtLIG6 DNA LIGASE 6 (.1)
AT5G57160 107 / 2e-23 ATLIG4 DNA ligase IV (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G094200
[exp]
527 / 8e-170 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1)
Potri.018G141900
[exp]
114 / 1e-25 AT5G57160 1372 / 0.0 DNA ligase IV (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021418
[exp]
1033 / 0 AT1G08130 1015 / 0.0 DNA ligase 1 (.1)
Lus10016149
[exp]
1032 / 0 AT1G08130 1015 / 0.0 DNA ligase 1 (.1)
Lus10017623
[exp]
543 / 9e-176 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1)
Lus10020013
[exp]
77 / 5e-14 AT5G57160 1352 / 0.0 DNA ligase IV (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0078 DNA_ligase PF01068 DNA_ligase_A_M ATP dependent DNA ligase domain
CL0078 PF04675 DNA_ligase_A_N DNA ligase N terminus
CL0021 OB PF04679 DNA_ligase_A_C ATP dependent DNA ligase C terminal region
Representative CDS sequence
>Potri.009G005900.2 pacid=42772563 polypeptide=Potri.009G005900.2.p locus=Potri.009G005900 ID=Potri.009G005900.2.v4.1 annot-version=v4.1
ATGCTCAGGCTCCGTCCATGCGTCTCTATACGCTCCATTTACTCCACGCGCCACTCCAAGCTTCTCTCTCCTCTCATTCCCTCTCTCTTCTTCTCTAAAT
CCCCATCATTTCTAAAAACCCACACTCTCTCTCTAAACCCTAATTCCACAATGTCCTCCTCTCGCCCCTCCGCCTTCGATGCTCTCATGTCCAACGCACG
TGCCGCCGCCTCCGCTAAGAAAAAAACCCAACCCCAACCCCAATTAAAACCCAGCTCCCCCAAAAAACGCAAAACCCTAGACCATCCTCAAAACCCTGAT
AAAACCCTCAGTTCCGTACAAAATCCCCAAACTGATGAATCTAAAAAGCTAATTAACACTCCAGATTCATCGAATGAGCCTAAATCAGAACCAAATTCTA
GGTCTGATAGCTTATTAAAAGTCAATGAATCGAATAAACTGAGAGTTGAGGATAAAAATACGGAGTTGAAGAGCAAGATTGTGTTGTTAAAGAAGAAAGC
TGGGGATTTTAAGCCGGAGATGGTGGCTAATTGGGAGAAAGGAGAGAGGGTTCCGTTTATATTTGTTTCTTTGGCTTTTGATTTGATAGCGAACGAGACA
GGGAGGATTGTGATTACTGATATTGTTTGTAATATGTTGAGGACTGTAATGGATACTACTCCGGAGGATTTGGTGGCTGTGGTTTATTTGTTAGCTAATA
AGGTTGCCCCTGCGCATGAGGGAGTGGAACTTGGGATTGGGGAAGCTTTGATTATTAAGGCGCTGGCGGAGGCGTGTGGGAGGAAAGAGAAGGAGGTTAA
GAAGCAGTATAAGGACTTGGGAGATTTGGGCCTTGTTGCAAAAGCAAGTCGGTCATCCCAATCTATGATGCGCAAGCCTGATCCATTAACAATTACTAAA
GTTTTCAACACATTTCAACAGATTGCTAAGGAATCCGGGAAGGATAGTCAAGACAAGAAAAAGAACCATATCAAGGCACTTCTTGTTGCAGCCACAGACT
GCGAGCCTCTGTATCTAATTCGTCTGCTTCAGACAAAGTTGAGAATTGGATTGGCAGAACAGACTCTTTTGGCTGCCCTGGGACAAGCTGCTGTATATAC
TGAAGAGCATTCTACTCCTCCTCCACACATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTTTACTCTGTGCTTCCTGTCTATGATAAA
ATAGTCCCTGCTCTTCTTAGTGATGGCGTATGGAATCTTCCCAAGACATGCAGCTTCACACCTGGTGTTCCAGTTGGACCTATGCTGGCAAAACCAACCA
AAGGGGTTTCTGAGATAGTAACTAAATTTCAGGATATGGAATTCTCCTGTGAATACAAGTATGATGGAGAACGTGCCCAGATACATTACTTGGAGAATGG
TTCGGTTGAGATATATAGTCGAAATTCTGAGCGAAATACTGGAAAATTTCCTGATGTTGTTGCTGTAATTTCCCGATTAAAGAGGCCCTCAGCAAGCTCA
TTTATTCTGGATTGTGAACTAGTTGCGTATGATAGAGAAAAAAAGAAAATTCTCCCCTTTCAGATCCTCAGCACCCGGGCCCGAAAAAATGTGGTGATGA
GTGATATCAAGGTTAATGTTTGCATATATGCCTTCGACATGTTGTATCTTAATGACCAACCACTTATTCAGAAAGAACTGAAAGTTCGTAGAGAGCATCT
TTACAGTTCATTCGAGGAAGAACCTGGATTTTTTCAGTTTGCAACTGCAATAACATCAAATGATCTTGAAGAGATACAAAAATTCCTCGACACTGCTGTT
GATGCCAGTTGTGAGGGTTTAATCATCAAAACAATGAATAAGGATGCTACATATGAACCTTCAAGGCGATCACATAACTGGCTGAAATTGAAGAAAGATT
ATATGGAAAGTATTGGAGACTCACTAGATCTAGTGCCTATTGGTGCTTTCCATGGTCGTGGAAAACGTACAGGTGTCTATGGTGCTTTTCTCCTTGCTTG
TTATAATAGCAACAACGAAGAATTCCAGAGCATATGTAAAATAGGCACTGGATTTTCTGAACAAGTGCTTGAGGAACGTTCTGCTAGTCTCCGTTCACAA
GTGATTCCCAAACCAAAGTCATACTATAGATTTGGAGATACTATTAAACCAGATGTGTGGTTTGAACCCAAGGAGGTGTGGGAGGTGAAAGCAGCAGACT
TGACTATTAGCCCTGTTCATCGTGCTGCAATTGGTGAAGTTGATCCTAACAAGGGAATTTCACTAAGATTTCCACGTCTTGTTCGAGTTCGAGAAGACAA
GTCTCCAGAGCAAGCCTCATCATCAGAGCAGGTTGCTGAGATGTATAATGCCCAAAAGCATAATCATCAAAACAATCAAGATGACAATGATGATGATGAT
TGA
AA sequence
>Potri.009G005900.2 pacid=42772563 polypeptide=Potri.009G005900.2.p locus=Potri.009G005900 ID=Potri.009G005900.2.v4.1 annot-version=v4.1
MLRLRPCVSIRSIYSTRHSKLLSPLIPSLFFSKSPSFLKTHTLSLNPNSTMSSSRPSAFDALMSNARAAASAKKKTQPQPQLKPSSPKKRKTLDHPQNPD
KTLSSVQNPQTDESKKLINTPDSSNEPKSEPNSRSDSLLKVNESNKLRVEDKNTELKSKIVLLKKKAGDFKPEMVANWEKGERVPFIFVSLAFDLIANET
GRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHEGVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITK
VFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDK
IVPALLSDGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNSERNTGKFPDVVAVISRLKRPSASS
FILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNVCIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAV
DASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQ
VIPKPKSYYRFGDTIKPDVWFEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQVAEMYNAQKHNHQNNQDDNDDDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08130 ATLIG1 DNA ligase 1 (.1) Potri.009G005900
[exp]
0 1
AT2G04660 APC2 anaphase-promoting complex/cyc... Potri.008G089600
[exp]
2.82 0.8017
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
6.70 0.7828
AT5G25800 Polynucleotidyl transferase, r... Potri.005G186600
[exp]
7.21 0.7844
AT2G35035 URED urease accessory protein D (.1... Potri.001G159600
[exp]
8.36 0.7942
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.018G145514
[exp]
14.42 0.7558
AT5G64200 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG ... Potri.005G165400
[exp]
19.74 0.7855
AT4G34110 PABP2, PAB2, AT... ARABIDOPSIS POLY\(A\) BINDING ... Potri.001G304000
[exp]
19.79 0.7818
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.017G144900
[exp]
20.12 0.7678
AT2G34050 unknown protein Potri.004G052200
[exp]
22.49 0.7670
AT5G18610 Protein kinase superfamily pro... Potri.008G046500
[exp]
28.58 0.7530 Pt-PNPK2.2

Potri.009G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.