Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22930 134 / 1e-38 Protein of unknown function (DUF1635) (.1) AT3G44940 113 / 3e-30 Protein of unknown function (DUF1635) (.1) AT2G28140 95 / 2e-23 Protein of unknown function (DUF1635) (.1) AT2G28690 48 / 2e-06 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G216100 [exp] 257 / 2e-86 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 88 / 1e-20 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 84 / 4e-19 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.009G027100 [exp] 59 / 5e-10 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 57 / 2e-09 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 54 / 2e-08 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 49 / 2e-06 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021419 [exp] 144 / 2e-42 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1) Lus10016148 [exp] 107 / 4e-29 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1) Lus10038677 [exp] 63 / 1e-11 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1) Lus10037944 [exp] 60 / 2e-10 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10005884 [exp] 49 / 1e-06 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 48 / 2e-06 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [poplar] [flax] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Potri.009G006000.1 pacid=42770920 polypeptide=Potri.009G006000.1.p locus=Potri.009G006000 ID=Potri.009G006000.1.v4.1 annot-version=v4.1 ATGGACAACCAAAGAGGTTCTGTTCTAAGCTGGGCTTACTACTGCCAGGGAAAGACAATGGATGAACTGAGGAATTCCCTTTTGTACACAACTTTGGAGC TGGAGCAAACAAGGGTGGCAGTTCAAGAAGAGCTAAGAAAGAAAGATGACCAGTTGTTCCATCTCAAGGATCTACTAATCAAAGCCATCAGAGAAAGAGA CGAGGCACAAGAGAAATGTCAAAGACTTGTCACTGAGAAAGTCCTGCTCCAACAGCAGCCACAACATCACCAAAATGCTCCTCTCTCTGGGATTTCCAGC ATTGAAGATGAACCGAGAAGAGGAATTGACTCCAGCAATGGCTTCTCATCATCAGACTGTGAAGAGAGCATTGTTTCATCTCCAGTTATTGACCCAACTC CACAACCATCCCAATTGCCCCCACCTGCAGCACCACAAACTATCCCCCAAGCAGCAATTGAGTTAGTTCCTGAAAAGCCATTACCTGAAAAGGGAAAGCT TTTACAGGCAGTAATGAAAGCTGGTCCCCTCTTACAGACTCTCCTTCTAGCCGGACCACTTCCTCAATGGAGACACCCACCACCACCACTCGAGTCCTTT GAGATCCCACCTGTCACCATACCTTCACCACCACCACCACCCGCACCTCAGCTCATCCACCAAGACTCATTTGTCAACATTAATGGTTGCAATAGAAAAA GGGTTCGCTGTGATGGCTCTGATTCTCCTACGAAGACCAAGTATCAAAACATAGTCCTCCACTGA
AA sequence Show only first row Show all	>Potri.009G006000.1 pacid=42770920 polypeptide=Potri.009G006000.1.p locus=Potri.009G006000 ID=Potri.009G006000.1.v4.1 annot-version=v4.1 MDNQRGSVLSWAYYCQGKTMDELRNSLLYTTLELEQTRVAVQEELRKKDDQLFHLKDLLIKAIRERDEAQEKCQRLVTEKVLLQQQPQHHQNAPLSGISS IEDEPRRGIDSSNGFSSSDCEESIVSSPVIDPTPQPSQLPPPAAPQTIPQAAIELVPEKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESF EIPPVTIPSPPPPPAPQLIHQDSFVNINGCNRKRVRCDGSDSPTKTKYQNIVLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	2.44	0.8348
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	2.82	0.8296
AT5G22930			Protein of unknown function (D...		Potri.004G216100 [exp]	5.65	0.8171
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	7.00	0.8179
AT4G31980			unknown protein		Potri.003G209100 [exp]	9.79	0.7787
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.010G196000 [exp]	11.00	0.8453
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	11.74	0.8357
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	15.29	0.7885
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	19.82	0.7281
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	20.07	0.7738

Compare expression of checked genes

Potri.009G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.