Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28130 417 / 3e-143 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021421 [exp] 469 / 3e-163 AT2G28130 430 / 6e-148 unknown protein Lus10016147 [exp] 243 / 1e-75 AT2G28130 238 / 6e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G006200.2 pacid=42771335 polypeptide=Potri.009G006200.2.p locus=Potri.009G006200 ID=Potri.009G006200.2.v4.1 annot-version=v4.1 ATGGATGCTCCTCTTGACTTTGAATTTGAAGACCCACTTCTTAATTCTCCTGTTATTGTCAAGAAAAGCAAGAAAGTTATTGGCTTGGATGATCTTTTGA CTGATCACTACCAGGAGAAAAGCAAAGTGATCGAGAGGGAATCTAAACGAGCAAAAGCAAAGAAAAAATATGATTCAGATGAGGATGATTTTGACAAAGA AGCTTTACTATCAAAACAAATTAATGAATGCCACAATCAGATGCAAGAATTGAGTGGTGAGGCAGAGATTGCCACGTGGGGTGTACATGTTTTTGGCAAT CAGAAACGCCTGCCAGTTCTTACACTGCCTGAGCTTGGAAGTTGCTCACTTTTGCAGTCTTTCATGAGCAGCGAGCTCAACTCTTTGGTTGAACTCACCA CAGAAAAAGTGGAAACTTTTCTTGAAGGACTATTAGTAAATGGTTGGCTCTCAAAATTGGTCAACACCCGTAGCTATATAGAAAAATCAATAGCTAAATG GACTTTCTATTTGATGTTATATTCATCAAAAGAAGAGTTGAGAGCATCTGCCTGTGACTTCTGGTGCAACATTCTTTCGCCTCGGGATAAGACCGAGAAG CTGCCTATCAGAATCGAGTGGTTTCCCAGTTACTGTGAGCTGAGAAGTGCTCTCAAAACATATGGATTTCTCTTCAATTATTTGTCACGGACAGAATCAA TAATCACCAATTCAGGGGTTAGAGGGCCACCTAAAAATATTAGAGCCTGGATCAAATTTGTAGCTGCCTGTTGTTGTGTCAGGAGCAAACGGCCTGTATT TTCAGCTTCAGAAGCTGAGGAACTAGTTGAAGTTGCTGTTTTCCTTTCCTCAGATCGCCAGCTTGAAGGTTTACTGGTGCTTTTGGATGAATTTGTGCAA TCAGTTATCAGTTACTTCACAGATGAAGAATGGAATATCAGCTGTGAAAAGATAGCAAGATCCATCTCTTGCAGAAGCCCCAGGGACTTGAACTGTTTGC AGACTGTGGAATGCATTTCAGGAGTCAGCACTCGTGGCAATCACCTGAGGAGTGCCATTTCTTATCAGATTCTGCTTAATTGTTTCGATAATAAGGCTTC CAACGAAGAAGAGATCCTGAGTTTCCTCATATCCATAAACGTGAAAGACCGAAGTTGTGATCTTTTCCAGATGTACATCTACCTGGTTTTGACTGAAAAC TGGCTCTTGTCCAATCCAATGTTTGAACTCAAGCCAGTGATCTATGAAATGTGGGGTGTTTATCTGCGAAACTGTTCTTGCCAAATCACCAGCACAGATA TGAGGCCCTATGCATCAAAGGTCCGCACAAAAGCTTCGTATATTCTATTTGGCACCACCAATAAATAA
AA sequence Show only first row Show all	>Potri.009G006200.2 pacid=42771335 polypeptide=Potri.009G006200.2.p locus=Potri.009G006200 ID=Potri.009G006200.2.v4.1 annot-version=v4.1 MDAPLDFEFEDPLLNSPVIVKKSKKVIGLDDLLTDHYQEKSKVIERESKRAKAKKKYDSDEDDFDKEALLSKQINECHNQMQELSGEAEIATWGVHVFGN QKRLPVLTLPELGSCSLLQSFMSSELNSLVELTTEKVETFLEGLLVNGWLSKLVNTRSYIEKSIAKWTFYLMLYSSKEELRASACDFWCNILSPRDKTEK LPIRIEWFPSYCELRSALKTYGFLFNYLSRTESIITNSGVRGPPKNIRAWIKFVAACCCVRSKRPVFSASEAEELVEVAVFLSSDRQLEGLLVLLDEFVQ SVISYFTDEEWNISCEKIARSISCRSPRDLNCLQTVECISGVSTRGNHLRSAISYQILLNCFDNKASNEEEILSFLISINVKDRSCDLFQMYIYLVLTEN WLLSNPMFELKPVIYEMWGVYLRNCSCQITSTDMRPYASKVRTKASYILFGTTNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28130			unknown protein		Potri.009G006200 [exp]	0	1
AT3G05940			Protein of unknown function (D...		Potri.005G000300 [exp]	9.21	0.7388
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	12.84	0.6959
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	19.07	0.7474
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	21.35	0.7354
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	27.56	0.7143
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	29.94	0.6758
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	32.64	0.6993
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	36.12	0.7213
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	36.33	0.7115
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	45.21	0.7315	SCD1.2

Compare expression of checked genes

Potri.009G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.