Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28110 596 / 0 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G22940 563 / 0 F8H FRA8 homolog (.1) AT1G27440 311 / 2e-102 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G61840 308 / 7e-101 GUT1, IRX10-L Exostosin family protein (.1) AT4G16745 120 / 4e-29 Exostosin family protein (.1.2) AT4G38040 117 / 1e-28 Exostosin family protein (.1) AT5G11130 108 / 2e-25 Exostosin family protein (.1) AT3G57630 105 / 4e-24 exostosin family protein (.1.2) AT5G03795 104 / 7e-24 Exostosin family protein (.1) AT3G42180 103 / 7e-24 Exostosin family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109200 [exp] 316 / 7e-104 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 316 / 7e-104 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 315 / 1e-103 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 313 / 6e-103 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 271 / 2e-87 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.015G107200 [exp] 117 / 3e-30 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.003G079000 [exp] 119 / 5e-29 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G054800 [exp] 112 / 4e-26 AT3G57630 1239 / 0.0 exostosin family protein (.1.2) Potri.007G058400 [exp] 109 / 7e-26 AT4G38040 649 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041343 [exp] 660 / 0 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 542 / 0 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10043209 [exp] 313 / 7e-103 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 313 / 7e-103 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 310 / 7e-102 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 310 / 9e-102 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 121 / 3e-29 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 117 / 6e-28 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10027707 [exp] 112 / 2e-26 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 110 / 3e-26 AT4G38040 677 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.009G006500.1 pacid=42771207 polypeptide=Potri.009G006500.1.p locus=Potri.009G006500 ID=Potri.009G006500.1.v4.1 annot-version=v4.1 ATGGTACTGGAGGTTAAAAGACCCACCATGAGCAATAACAGGAGGGGGTTTTATGTTAGAATGAAACTATTACACAGACATGCTGGACTTCAACAACAAG AGAAGAAGAAGAATCTTTGTTTCAAATATTACAAATGGCTTCTTTGGTTTTCTCTTCTTCTATATTTCCTTAGCTCTTGCTTCTTCACCCACAAACCCAT TCCCCTCTCCAAAACCCATGTCTCAGAATCTAAAACTGTTGTTTCCCGTGCCCTCTTTGAATCCTCCAACTCCACTTTCATTCAACAGAGCAAGAACATC AATCGAGGATTATTAAAGGATTTGAAGGTATACATATATGAGTTGCCATCAAAATACAACACGGACTGGCTAGCAAATGAGAGGTGCAGCAACCATTTGT TTGCATCAGAAGTTGCCATTCATAAAGCACTATCAAACAGTCTTGATATACGGACGTTTGACCCATACGAAGCTGATTTCTTCTTTGTTCCTGTTTACGT GTCCTGCAATTTCAGCACCGTTAATGGGTTCCCTGCAATTGGTCATGCAAGGTCCTTATTATCCTCTGCGGTGCAGCTCATTTCCTCTAACTATCCATTT TGGAACCGCTCTCAAGGATCTGATCATGTCTTTGTTGCCTCTCACGATTACGGCGCTTGTTTCCATGCCATGGAGGAGAGAGCTATGGAAGATGGGATCC CAGAGTTTTTGAAGAGGTCGATCATATTGCAGACTTTTGGTGTCAAATTTAACCATCCATGCCAAGACGTTGAGAATGTCGTGATACCACCTTACATCTC GCCGGAAAGAGTACGGACAACACTCGAGAATTATCCGCTGAACGGCCGGCGGGACATTTGGGCCTTCTTTAGAGGCAAAATGGAAGTGCACCCCAAAAAC ATTAGTGGACGATATTACAGCAAGAAAGTGAGGACGGTGATATGGAGAAAATACAGCGGTGACCGGAGGTTTTATTTGCAAAGGCACAGGTTTGCCGGTT ACCAGTCAGAAATCGTCCGGTCAGTGTTCTGTTTATGCCCCTTGGGATGGGCCCCATGGAGCCCGAGGCTGGTGGAATCTGTTGCATTAGGGTGCGTGCC GGTCATAATTGCGGATGGAATCCGGTTGCCCTTCCCCACTGCTGTCCGGTGGTCGGAGATATCCCTAACCGTGGCCGAAAAGGACGTGGCCAATCTAGGA ACTCTACTCGATCACGTGGCAGCTACCAATTTGTCAGCCATTCAGAAAAACTTGTGGGACCCAGACGTTAGGCGGGCCCTCCTTTTCAATGATCGAGTGC AGGAAGGCGATGCCACGTGGCAGGTGCTTTATGCCTTGGCACGGAAGCTGGACAGGTCGTACAGAACCGTGAGGCTTCCAAACCAATAG
AA sequence Show only first row Show all	>Potri.009G006500.1 pacid=42771207 polypeptide=Potri.009G006500.1.p locus=Potri.009G006500 ID=Potri.009G006500.1.v4.1 annot-version=v4.1 MVLEVKRPTMSNNRRGFYVRMKLLHRHAGLQQQEKKKNLCFKYYKWLLWFSLLLYFLSSCFFTHKPIPLSKTHVSESKTVVSRALFESSNSTFIQQSKNI NRGLLKDLKVYIYELPSKYNTDWLANERCSNHLFASEVAIHKALSNSLDIRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLLSSAVQLISSNYPF WNRSQGSDHVFVASHDYGACFHAMEERAMEDGIPEFLKRSIILQTFGVKFNHPCQDVENVVIPPYISPERVRTTLENYPLNGRRDIWAFFRGKMEVHPKN ISGRYYSKKVRTVIWRKYSGDRRFYLQRHRFAGYQSEIVRSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPTAVRWSEISLTVAEKDVANLG TLLDHVAATNLSAIQKNLWDPDVRRALLFNDRVQEGDATWQVLYALARKLDRSYRTVRLPNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	0	1
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.009G095800 [exp]	2.82	0.8580	CAD,Pt-CAD4.1
AT5G42710			unknown protein		Potri.002G261700 [exp]	3.74	0.8780
AT5G43150			unknown protein		Potri.008G152200 [exp]	7.14	0.8540
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	7.48	0.8082
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.017G054000 [exp]	8.42	0.7663
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.008G026400 [exp]	8.77	0.8408	Pt-MANS.1
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	11.66	0.8032
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	13.41	0.8339
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	14.14	0.8371
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	14.49	0.8017

Compare expression of checked genes

Potri.009G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.