Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XTR8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44990 407 / 3e-144 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT2G36870 397 / 4e-140 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT1G32170 201 / 1e-62 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 201 / 2e-62 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G10550 199 / 2e-62 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G14720 199 / 7e-62 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 197 / 2e-61 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT3G25050 186 / 2e-57 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G13090 182 / 5e-56 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT5G57550 182 / 6e-56 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 409 / 4e-145 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 408 / 2e-144 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G163850 [exp] 209 / 3e-66 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.001G136100 [exp] 200 / 4e-62 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 199 / 8e-62 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.008G138400 [exp] 197 / 4e-61 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.010G102300 [exp] 194 / 7e-60 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.006G071200 [exp] 189 / 1e-58 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.014G115000 [exp] 187 / 1e-57 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021422 [exp] 424 / 1e-150 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 416 / 1e-147 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 414 / 5e-147 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 413 / 2e-146 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 382 / 6e-134 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 377 / 3e-132 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 375 / 2e-131 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 375 / 3e-131 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 320 / 2e-109 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 240 / 1e-79 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.009G006600.1 pacid=42771920 polypeptide=Potri.009G006600.1.p locus=Potri.009G006600 ID=Potri.009G006600.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTCTCTACCTTCCACTCATTCTATTAATCATCCCTTTAATGATCACTACTGCTCAAAACACACCTTCACCTGGCTACTATCCTGGCTCCC GAATAAGCTCAATTGGCTTTGATCAAGGGTATAGCAACCTTTGGGGTGCTCAGCATCAAAGAGTAGAGCAAGGCACCGTAACAATATGGCTTGATAGTAG CTCAGGTAGTGGTTACAAGTCACTTCATCCATATCGATCAGGATACTTTGGTGCTGCCATCAAGCTTCAACCTGGTTACACTGCTGGAGTGATTACATCT TTCTATCTTTCGAATAATGAAGCCCATCCTGGGGACCATGATGAAATAGATATTGAGTTCCTAGGAACAACTCCCGATAAGCCATACACTTTGCAGACAA ATGTGTACATAAGAGGAAGTGGGGATAGAAACATTATTGGAAGAGAGATGAAGTTTCATCTGTGGTTCGATCCTACACAAGATTTTCATAATTATGCCAT TCTATGGACCCCAAGTGAGATCATATTCTTGGTGGACGATGTTCCCATCAGAAGGTATCCAAGAAAAAGCGATGCAACATTTCCCTTAAGGCCAATGTGG GTATATGGCTCAATCTGGGATGCATCGTCGTGGGCCACTGAGGATGGAAAATACAAAGCCGACTATAACTACCAACCGTTCATTGGCAGGTACAAAAACT TCAAAATCGGTGGGTGCACCGCCGATGGGCCTGCCGCTTGCAGCCCACCGTCTGCTTCTCCATCCGGCTCCGGTGGCTTGAGCCAGCAGCAGTCCTCGGT GATGGAATGGGTGCAGAGGAACTACTTGGTTTATGACTATTGCAGGGATGGGAAAAGGGACCATACCCAAACACCTGAGTGTTAA
AA sequence Show only first row Show all	>Potri.009G006600.1 pacid=42771920 polypeptide=Potri.009G006600.1.p locus=Potri.009G006600 ID=Potri.009G006600.1.v4.1 annot-version=v4.1 MASLLYLPLILLIIPLMITTAQNTPSPGYYPGSRISSIGFDQGYSNLWGAQHQRVEQGTVTIWLDSSSGSGYKSLHPYRSGYFGAAIKLQPGYTAGVITS FYLSNNEAHPGDHDEIDIEFLGTTPDKPYTLQTNVYIRGSGDRNIIGREMKFHLWFDPTQDFHNYAILWTPSEIIFLVDDVPIRRYPRKSDATFPLRPMW VYGSIWDASSWATEDGKYKADYNYQPFIGRYKNFKIGGCTADGPAACSPPSASPSGSGGLSQQQSSVMEWVQRNYLVYDYCRDGKRDHTQTPEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	0	1	XTR8.1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	10.72	0.6418
AT5G63440			Protein of unknown function (D...		Potri.015G094300 [exp]	18.65	0.6216
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	19.69	0.7633
AT2G37530			unknown protein		Potri.006G083800 [exp]	19.82	0.7532
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.018G062350 [exp]	20.19	0.7432
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	21.67	0.7317
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.003G089800 [exp]	28.24	0.7482
					Potri.017G110800 [exp]	40.47	0.7280
AT5G66816			unknown protein		Potri.007G042000 [exp]	61.02	0.7094
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G450700 [exp]	63.87	0.7277

Compare expression of checked genes

Potri.009G006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.