Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45010 165 / 9e-50 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 160 / 7e-48 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 156 / 3e-46 SCPL47 serine carboxypeptidase-like 47 (.1) AT2G27920 62 / 3e-12 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT1G28110 48 / 3e-07 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT3G02110 44 / 1e-05 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30810 42 / 5e-05 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G17180 41 / 7e-05 SCPL33 serine carboxypeptidase-like 33 (.1) AT2G24010 41 / 7e-05 SCPL23 serine carboxypeptidase-like 23 (.1) AT2G35770 40 / 0.0001 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215400 [exp] 200 / 6e-63 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.008G034800 [exp] 157 / 8e-47 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 156 / 3e-46 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.006G119300 [exp] 63 / 1e-12 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.009G003100 [exp] 62 / 4e-12 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.006G036000 [exp] 56 / 4e-10 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 53 / 8e-09 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 51 / 3e-08 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 50 / 5e-08 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037380 [exp] 158 / 2e-50 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10017466 [exp] 162 / 2e-48 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 160 / 1e-47 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 159 / 4e-47 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 158 / 9e-47 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041352 [exp] 66 / 3e-13 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10036578 [exp] 64 / 1e-12 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10036016 [exp] 54 / 4e-09 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10016722 [exp] 53 / 5e-09 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10000147 [exp] 50 / 4e-08 AT5G22980 380 / 3e-137 serine carboxypeptidase-like 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.009G006701.1 pacid=42770947 polypeptide=Potri.009G006701.1.p locus=Potri.009G006701 ID=Potri.009G006701.1.v4.1 annot-version=v4.1 ATGCGAAAATGCAATGGTGGCGTTGTTTATGACGCGATGGCAAGGGACTGGATGAGAAACTCTGCATTAGGAATTCCTGCTCTCCTTGAAGATGGTATCA GGTTGCTTACTTATGCTGGAGAGGAGGATCTCATATGCAACTGGCTTGGAAATTCAAGGTGGGTTAATGCATTGGCATGGTCTGGGAAGAAGAAAGCCTT CGGAGAAGCTCCCACAGTTCCATTCGTTGTTGAAGGCAAAAAAGCAGGACAGCTAAAACTTCTTAGTTTCCTAAAGGTTCACAATGCTGGTCACTTTGTT CCAATGGATCAGCCAAAAGCTGCATTAACAATGCTGAAGAGCTGGTTGCAAGGAAAGCTGTCGCTCCCTGGTAACTTGCGTCTGCTGTTTTAG
AA sequence Show only first row Show all	>Potri.009G006701.1 pacid=42770947 polypeptide=Potri.009G006701.1.p locus=Potri.009G006701 ID=Potri.009G006701.1.v4.1 annot-version=v4.1 MRKCNGGVVYDAMARDWMRNSALGIPALLEDGIRLLTYAGEEDLICNWLGNSRWVNALAWSGKKKAFGEAPTVPFVVEGKKAGQLKLLSFLKVHNAGHFV PMDQPKAALTMLKSWLQGKLSLPGNLRLLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.009G006701 [exp]	0	1
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.007G079700 [exp]	16.91	0.6142
					Potri.011G106900 [exp]	24.97	0.6385
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	35.09	0.6136
AT5G09360		LAC14	laccase 14 (.1)		Potri.001G206200 [exp]	50.82	0.6322
					Potri.011G107301 [exp]	54.44	0.5918
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.007G089500 [exp]	58.86	0.6017
AT5G13620			unknown protein		Potri.001G155600 [exp]	67.97	0.5417
AT5G07610			F-box family protein (.1)		Potri.018G132800 [exp]	75.74	0.5655
AT2G31335			unknown protein		Potri.019G012603 [exp]	77.76	0.5103
AT5G66985			unknown protein		Potri.007G034700 [exp]	80.28	0.5983

Compare expression of checked genes

Potri.009G006701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.