Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08125 370 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G44170 117 / 4e-31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73320 111 / 3e-28 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G26200 66 / 8e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 57 / 2e-09 Putative methyltransferase family protein (.1) AT3G50850 53 / 8e-08 Putative methyltransferase family protein (.1) AT4G35987 52 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G79915 51 / 4e-07 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017000 [exp] 118 / 1e-31 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 116 / 1e-30 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 64 / 7e-12 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G025600 [exp] 61 / 2e-10 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.009G068400 [exp] 57 / 2e-09 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.006G225600 [exp] 56 / 2e-08 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G321100 [exp] 46 / 2e-05 AT4G14000 350 / 8e-122 Putative methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021425 [exp] 419 / 2e-148 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10016141 [exp] 188 / 1e-57 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 119 / 2e-31 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018640 [exp] 109 / 3e-28 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039876 [exp] 98 / 2e-24 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014309 [exp] 61 / 3e-10 AT5G49560 283 / 1e-95 Putative methyltransferase family protein (.1) Lus10024993 [exp] 59 / 2e-09 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041898 [exp] 45 / 7e-05 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10028446 [exp] 44 / 7e-05 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.009G006800.1 pacid=42772116 polypeptide=Potri.009G006800.1.p locus=Potri.009G006800 ID=Potri.009G006800.1.v4.1 annot-version=v4.1 ATGGAGCCTGACAGGTTAAATTATCCAAGCACCTCTGCTATTACATTTGAAGTTTTGGGCCATCAACTGCAGTTCTCTCAAGATCCAAATTCCAAGCATT TAGGAACCACTGTTTGGGATGCATCAATGGTGTTGGTTAAATTTCTGGAAAGGAATTGCAGAAGGGGAAGGTTTTGTCCATCTAAACTGAAAGGAAAACG CGTTATTGAACTTGGAGCAGGATGTGGAGTAGCTGGATTTGGGATGGCACTACTGGGATGTGATGTAATTGCAACTGACCAAATAGAGGTTTTGCCACTG CTAATGAGAAATGCTGAACGCAATACTTCAAGAATAACGCAGAAAGATTCCAATTCAGATTCATTTGGATCTATCCAGGTTGCAGAATTGGACTGGGGGA ACGAAGATCATATAAGGGCTGTTGATCCACCATTTGACTACATCATTGGCACTGATGTTGTTTATGCAGAGCATCTCTTGGAACCACTGTTGCAGACACT ACTTGCTTTATCAGGACCGAAAACCACTATTTTGTTGGGGTATGAGATCCGTTCTACCAACGTCCATGACCGAATGCTCGACATGTGGAAAAAAAACTTT GAGGTGAAAACTGTTCCAAAAGCAAAGATGGACAGTAATTACCAACATCCCAGTATTCAACTTTACATCATGGGATTGAAGCCTCCAGCTGGGATCATAG GAAACAGGATTTCGGAGCTTGAGCAACAAACTGATGAGGTTGAAATGGTAGATGAGGTACTGAAAGATGATGAGAATGGTGGGAGTAGTAATACCAAGAA AAGGTTGGAAGATTGCAGCAGTGAAAAGGTTCATGAAGATTGTGAGCTAGCGATGAAAATTCCAAATGGAAAACTTACTGATTGGGAAGCAAGAAGATTA GGCTCAATGACCGCTCGACTTCTTCAAGATGTCAAGATAACATGA
AA sequence Show only first row Show all	>Potri.009G006800.1 pacid=42772116 polypeptide=Potri.009G006800.1.p locus=Potri.009G006800 ID=Potri.009G006800.1.v4.1 annot-version=v4.1 MEPDRLNYPSTSAITFEVLGHQLQFSQDPNSKHLGTTVWDASMVLVKFLERNCRRGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCDVIATDQIEVLPL LMRNAERNTSRITQKDSNSDSFGSIQVAELDWGNEDHIRAVDPPFDYIIGTDVVYAEHLLEPLLQTLLALSGPKTTILLGYEIRSTNVHDRMLDMWKKNF EVKTVPKAKMDSNYQHPSIQLYIMGLKPPAGIIGNRISELEQQTDEVEMVDEVLKDDENGGSSNTKKRLEDCSSEKVHEDCELAMKIPNGKLTDWEARRL GSMTARLLQDVKIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08125			S-adenosyl-L-methionine-depend...		Potri.009G006800 [exp]	0	1
AT3G58610			ketol-acid reductoisomerase (....		Potri.011G052700 [exp]	1.41	0.8606
AT5G11340			Acyl-CoA N-acyltransferases (N...		Potri.006G248900 [exp]	6.32	0.8516
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.002G136800 [exp]	9.64	0.8540
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	11.26	0.7563
AT1G23860		SRZ21, SRZ-21, ...	RS-containing zinc finger prot...		Potri.019G050600 [exp]	12.12	0.8457
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	15.65	0.8478	ARP901,ARP4.2
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	21.26	0.8553
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Potri.003G008300 [exp]	22.62	0.7847
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.001G251600 [exp]	26.55	0.8265
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	30.72	0.8439

Compare expression of checked genes

Potri.009G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.