Plant FIBer expression Database

Potri.009G006900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28100 704 / 0 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G131400
[exp]
484 / 2e-168 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1)
Potri.015G133500
[exp]
481 / 4e-167 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021427
[exp]
706 / 0 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10016140
[exp]
694 / 0 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10031681
[exp]
452 / 3e-155 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1)
Lus10027390
[exp]
438 / 7e-150 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1)
Lus10027391
[exp]
44 / 2e-05 ND 44 / 4e-06
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF01120 Alpha_L_fucos Alpha-L-fucosidase
Representative CDS sequence
>Potri.009G006900.1 pacid=42771043 polypeptide=Potri.009G006900.1.p locus=Potri.009G006900 ID=Potri.009G006900.1.v4.1 annot-version=v4.1
ATGAATCTGATCCTCTTATGTCTCTCATTCTCTTTGATATTTCCCATTTCCCACTGTGCCCTCCAAAAGCCACCCCCACTTCCCATTTTACCCATCCCAA
CAGCTTCTCAATTCCAATGGCAACTCTCATCAATGGCACTCTTCTTTCACTTTGGAACCAATACCTTTACAGACTCAGAGTGGGGTACTGGCCAGGTTGA
CCCTTCTGTGTTCAACCCGACCCGTCTCAATACCACCCAGTGGGTCCAGGTTGCTAAAGACTCTGGCTTTAACCGTGTGATCCTCACTGCAAAGCATCAT
GATGGGTTCTGTTTATGGCCTAGTGAGTACACAGACTACTCTGTGAAGTCAACTTCTTGGAGAAATGGAAGTGGGGATGTTGTAAAGGAGCTTTCTTTGG
CTGCTAAAGAGGCTGGTGTTGATTTGGGTCTTTATCTTTCACCATGGGATAGGCATGAGGGGTGTTATGGAAAGACTTTGGAGTATAATGAGTTCTATTT
AGGCCAAATGACTGAGTTGTTGACAAGGTATGGAGAGATAAAGGAGGTATGGTTGGATGGTGCGAAAGGAGAGGGAGAGAAGGACATGGAGTATTTTTTC
GATAGTTGGTTTAGTCTCATTCATCAACATCAGCCTGGGGCTATCATCTTTTCTGATGCAGGTCCTGATACAAGGTGGATTGGGGATGAGGCTGGTGTCG
CTGGGTCTACTTGCTGGTCTCTTTTTAATCGGAGTTCTGCCCAGATTGGAAACACTGATCCTATATACTCGCAGGGAGGAGACCCATCAGGTCATGACTG
GGTGCCTGCTGAGTGTGATGTATCCATTCGACCTGGTTGGTTTTGGCATGCTTCGGAAGTTCCAAAATCTGCAATAAAGCTTCTCGACATATACTACAAA
TCTGTTGGCAGAAACTGTCTCTTGTTACTAAATGTGCCCCCAAACTCTTCAGGTCTTATATCAGATGAAGACATACAAGTACTTAAAGAATTTTCTGAAC
TCCGAAGGTCCATATTTTCTGATAATCTAGCTGGGAATGCCATTCTTAATGCAAGCAGCACACGAGGCAGCATTGGTGATTCTCGCTTTGATCCCTATAA
CATCTTCAAAGAAGGCATTTACACCTATTGGGCACCCGAGGAGAATGTATCTGATTGGGCATTACACTTAAACCTTCAAGAGTCGGTATCTTTCAATGTT
TTGCAAGTACAAGAACCAATTCACATGGGACAGCGAATTATGGCATTCCATCTTGAGGTCTTGAATGAAGACGGGGACTGGAGGATGGTGATTAATGGCA
CTACAGTTGGATATCAAAGGCTGTTGCATTTTCCTAATGTAGAATCTCAACACCTGAAATTTGTTATAGACAAGAGTCGGGCAGACCCACTCATTTCATA
CTTGGGAATCTACATGGATCAGTTTTCCATTGTGAATTCTGCATTTCATAGAAGCTCGCCAACAAACAACTACAGCAGTCAAGTTCTTCGGCAAGCAATA
CACAACCATTCTACAACAGCCTCTATTTAA
AA sequence
>Potri.009G006900.1 pacid=42771043 polypeptide=Potri.009G006900.1.p locus=Potri.009G006900 ID=Potri.009G006900.1.v4.1 annot-version=v4.1
MNLILLCLSFSLIFPISHCALQKPPPLPILPIPTASQFQWQLSSMALFFHFGTNTFTDSEWGTGQVDPSVFNPTRLNTTQWVQVAKDSGFNRVILTAKHH
DGFCLWPSEYTDYSVKSTSWRNGSGDVVKELSLAAKEAGVDLGLYLSPWDRHEGCYGKTLEYNEFYLGQMTELLTRYGEIKEVWLDGAKGEGEKDMEYFF
DSWFSLIHQHQPGAIIFSDAGPDTRWIGDEAGVAGSTCWSLFNRSSAQIGNTDPIYSQGGDPSGHDWVPAECDVSIRPGWFWHASEVPKSAIKLLDIYYK
SVGRNCLLLLNVPPNSSGLISDEDIQVLKEFSELRRSIFSDNLAGNAILNASSTRGSIGDSRFDPYNIFKEGIYTYWAPEENVSDWALHLNLQESVSFNV
LQVQEPIHMGQRIMAFHLEVLNEDGDWRMVINGTTVGYQRLLHFPNVESQHLKFVIDKSRADPLISYLGIYMDQFSIVNSAFHRSSPTNNYSSQVLRQAI
HNHSTTASI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28100 ATFUC1 alpha-L-fucosidase 1 (.1) Potri.009G006900
[exp]
0 1
AT5G37550 unknown protein Potri.017G131300
[exp]
1.41 0.7863
AT1G75810 unknown protein Potri.005G241200
[exp]
1.73 0.7773
AT4G19670 RING/U-box superfamily protein... Potri.012G119000
[exp]
3.00 0.7970
AT5G04220 SYT3, NTMCTYPE1... synaptotagmin 3, Calcium-depen... Potri.010G223900
[exp]
15.87 0.7040
Potri.006G273733
[exp]
16.97 0.7321
AT1G48790 AMSH1 associated molecule with the S... Potri.015G045800
[exp]
19.89 0.6482
AT1G08760 Plant protein of unknown funct... Potri.007G131600
[exp]
24.18 0.6886
AT3G13410 unknown protein Potri.003G223601
[exp]
25.29 0.7163
AT3G50860 Clathrin adaptor complex small... Potri.005G122900
[exp]
31.74 0.6976
AT2G02220 ATPSKR1 phytosulfokin receptor 1 (.1) Potri.017G050700
[exp]
34.20 0.6957

Potri.009G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.