Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08110 318 / 4e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) AT1G67280 82 / 2e-18 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 72 / 3e-15 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214966 [exp] 124 / 1e-36 AT1G08110 110 / 3e-32 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.004G013200 [exp] 81 / 9e-18 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.018G084800 [exp] 81 / 1e-17 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.006G160600 [exp] 80 / 2e-17 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G042100 [exp] 75 / 2e-15 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.009G055500 [exp] 45 / 1e-05 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016138 [exp] 330 / 3e-115 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10021429 [exp] 326 / 8e-115 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10043235 [exp] 81 / 2e-17 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 81 / 2e-17 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 76 / 2e-15 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 73 / 3e-15 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10038612 [exp] 69 / 2e-13 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10000007 [exp] 40 / 0.0003 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [poplar] [flax] Glyoxalase PF00903 [poplar] [flax] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.009G007200.5 pacid=42772315 polypeptide=Potri.009G007200.5.p locus=Potri.009G007200 ID=Potri.009G007200.5.v4.1 annot-version=v4.1 ATGATAATTACTCACCCTCGCATGGCTACCGCCGCTACCTTATTCTTATCTCGCCTTTCTTTCTTTCGATTCACCACTAATAAATCTTCTTCAATAAAAC CAAACCCATTTTTTCTCTATTCTAAAACTACTAAGAATCCAAATCGACCAAGACTCATTTCAATGGCATCGGAAGCGAAGGAATCAGCTTCAAACAATCC AGGTCTTCACACCACTCCTGATGAAGCTACTAAAGGATATATCATGCAACAAACTATGTTTCGAATTAAGGATCCTAAAGTCAGTCTTGACTTCTATTCT CGTGTTTTGGGCATGTCGTTGCTAAAGAGACTGGATTTTCCAGAGATGAAGTTCAGCCTGTATTTTTTGGGCTATGAGGATCATGCATCAGCTCCAGGCG ACTCAGTTGAAAGAACAGTTTGGACTTTTGGTCGGAAGGCTACAATTGAATTAACACATAATTGGGGCACTGAAAGTGATCCTGAGTTCAAATATCACAA TGGAAATTCAGAACCGCGTGGCTTTGGACATATTGGTGTTACTGTTGATGACACATACAAGGCATGTGAGAGATTTGAACGCCTAGGGGTGGAGTTTGTC AAAAAACCCGAGGATGGAAAAATGAAAGGGATAGCATTCATTAAGGATCCTGATGGCTATTGGATAGAAATCTTCGATCTCAAAACTATTGGAAAAATAA CTGAATCTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.009G007200.5 pacid=42772315 polypeptide=Potri.009G007200.5.p locus=Potri.009G007200 ID=Potri.009G007200.5.v4.1 annot-version=v4.1 MIITHPRMATAATLFLSRLSFFRFTTNKSSSIKPNPFFLYSKTTKNPNRPRLISMASEAKESASNNPGLHTTPDEATKGYIMQQTMFRIKDPKVSLDFYS RVLGMSLLKRLDFPEMKFSLYFLGYEDHASAPGDSVERTVWTFGRKATIELTHNWGTESDPEFKYHNGNSEPRGFGHIGVTVDDTYKACERFERLGVEFV KKPEDGKMKGIAFIKDPDGYWIEIFDLKTIGKITESAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	0	1
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	1.41	0.7575
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	3.46	0.7528
AT5G57000			unknown protein		Potri.006G148000 [exp]	5.29	0.6853
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	6.24	0.7008
AT4G18460			D-Tyr-tRNA(Tyr) deacylase fami...		Potri.011G062200 [exp]	6.92	0.7220
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	7.34	0.7569
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015200 [exp]	8.94	0.7363
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	10.48	0.7171	TSA1.1
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	10.95	0.7339	PDF1.2
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	12.00	0.7181

Compare expression of checked genes

Potri.009G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.