Plant FIBer expression Database

Potri.009G007400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28780 208 / 2e-65 PIF1 helicase (.1)
AT3G51690 201 / 2e-62 PIF1 helicase (.1)
AT3G51700 199 / 1e-61 PIF1 helicase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G167001
[exp]
546 / 0 AT5G28780 220 / 2e-70 PIF1 helicase (.1)
Potri.012G073100
[exp]
491 / 1e-176 AT5G28780 174 / 8e-52 PIF1 helicase (.1)
Potri.001G185950
[exp]
442 / 6e-145 AT5G28780 213 / 3e-61 PIF1 helicase (.1)
Potri.006G157501
[exp]
384 / 1e-130 AT5G28780 196 / 2e-57 PIF1 helicase (.1)
Potri.003G004501
[exp]
358 / 4e-125 AT5G28780 162 / 5e-48 PIF1 helicase (.1)
Potri.009G002650
[exp]
325 / 3e-102 AT5G28780 154 / 1e-40 PIF1 helicase (.1)
Potri.001G165240
[exp]
312 / 1e-97 AT5G28780 171 / 1e-46 PIF1 helicase (.1)
Potri.011G042150
[exp]
286 / 3e-88 AT5G28780 174 / 1e-47 PIF1 helicase (.1)
Potri.013G071501
[exp]
260 / 5e-79 AT5G28780 127 / 1e-31 PIF1 helicase (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02689 Herpes_Helicase Helicase
CL0023 P-loop_NTPase PF05970 PIF1 PIF1-like helicase
Representative CDS sequence
>Potri.009G007400.2 pacid=42772680 polypeptide=Potri.009G007400.2.p locus=Potri.009G007400 ID=Potri.009G007400.2.v4.1 annot-version=v4.1
ATGTGCCTCTCTACTCATGGTCTGGCCGCTGAAGAAAGAACTGAAATCAGCGAATTTGCTAGGTGGATTTTAAGCATTGGTAATGGTGATATCTCTGATT
TACCTTTCTCTGGTGAGTTAGATGATTCTTTTATTAGTATTCCCTCAGATCTACTCCTTCATACTTCATGTGATCCAATTCCAGCCATTGTCTCAGCAAT
TTATCCATCTATTTCGGACCCTCAAATGGACCCCTGCTATTTTAGAGAAAGAGCCATTGTAACACCGAGAAACACAACAGTTGTTGAAATTAATGATTTT
GTGCTTGCTATGACACCCGGCAACAAACATATCTATCTTAGCACAGATTCTATTTCAACGTCATCAAGAGAGACTGACATTGCCAATTCATTATATCCAA
CAGAATATATCAACCAACTTGAATTTAATGGTGTGCCACCTCATACATTTGCTTTGAAAATCGGGACACCAGTCATGTTGCTTAGAAATATCAACCCATC
TATTGGTTTATGTAATGGGACAAGACTTATAGTGACACAGCTTTCAGCAAGAGTCATTGAAGCACAGATAATAACTGGGTCTAATATTGGTAATAGAGTT
TTTATACCAATAATTATCTTTCCAATAAATGAAGGAAGGTGTTCGTTTACGATAAAAAGACGTCAGTTTCCTTTAAGACTGTGTTACGCAATGACAATAA
ATAAAAGTCAAGGCCAATCATTGAAAACTGTTGGAGTCTTTCTTAAAGAACAAGTCTTCACTCATGGCCAACTTTATGTCGCTCTATCAAGAGTCACTTC
AAGAAAGGGTTTAAAAATTATCTCATGCAATAATCAAGGGGAACCTTCTCATTATGCAAAAAATATTGTCTATAAAGATATTATAAGCGCTCTTCCTAAA
GGTTGTTTTTAA
AA sequence
>Potri.009G007400.2 pacid=42772680 polypeptide=Potri.009G007400.2.p locus=Potri.009G007400 ID=Potri.009G007400.2.v4.1 annot-version=v4.1
MCLSTHGLAAEERTEISEFARWILSIGNGDISDLPFSGELDDSFISIPSDLLLHTSCDPIPAIVSAIYPSISDPQMDPCYFRERAIVTPRNTTVVEINDF
VLAMTPGNKHIYLSTDSISTSSRETDIANSLYPTEYINQLEFNGVPPHTFALKIGTPVMLLRNINPSIGLCNGTRLIVTQLSARVIEAQIITGSNIGNRV
FIPIIIFPINEGRCSFTIKRRQFPLRLCYAMTINKSQGQSLKTVGVFLKEQVFTHGQLYVALSRVTSRKGLKIISCNNQGEPSHYAKNIVYKDIISALPK
GCF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28780 PIF1 helicase (.1) Potri.009G007400
[exp]
0 1
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.004G043600
[exp]
3.16 0.7535
Potri.006G047250
[exp]
6.92 0.7048
AT5G64080 AtXYP1 xylogen protein 1, Bifunctiona... Potri.002G092800
[exp]
9.16 0.6624
AT5G66740 Protein of unknown function (D... Potri.007G027800
[exp]
12.40 0.5929
AT4G29250 HXXXD-type acyl-transferase fa... Potri.018G032700
[exp]
15.29 0.6372
AT5G55690 MADS MADS-box transcription factor ... Potri.001G214900
[exp]
15.49 0.5414
AT5G19040 ATIPT5 Arabidopsis thaliana ISOPENTEN... Potri.004G150900
[exp]
15.96 0.5566
Potri.014G132050
[exp]
18.97 0.5364
AT5G28470 Major facilitator superfamily ... Potri.006G091600
[exp]
19.07 0.5693
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.018G098300
[exp]
21.54 0.5607 Pt-ATCHX3.2

Potri.009G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.