Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PNATH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60790 956 / 0 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT3G54540 410 / 5e-135 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G64550 410 / 6e-135 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G64840 213 / 1e-60 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 211 / 1e-59 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G28390 75 / 1e-13 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28415 72 / 7e-13 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28345 66 / 5e-11 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28380 64 / 2e-10 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 62 / 7e-10 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214300 [exp] 1041 / 0 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 415 / 9e-137 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 410 / 4e-135 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.008G003300 [exp] 407 / 1e-133 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.007G080600 [exp] 211 / 8e-60 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 200 / 1e-55 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.011G133800 [exp] 74 / 3e-13 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 67 / 3e-11 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059700 [exp] 61 / 1e-09 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028810 [exp] 997 / 0 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10038681 [exp] 989 / 0 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10037947 [exp] 954 / 0 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10029363 [exp] 415 / 1e-136 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10016184 [exp] 411 / 4e-135 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10032431 [exp] 410 / 6e-135 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 409 / 1e-127 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10006804 [exp] 202 / 2e-56 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 202 / 3e-56 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 82 / 7e-19 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0023 [poplar] [flax] P-loop_NTPase PF12848 [poplar] [flax] ABC_tran_Xtn ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.009G007800.2 pacid=42772661 polypeptide=Potri.009G007800.2.p locus=Potri.009G007800 ID=Potri.009G007800.2.v4.1 annot-version=v4.1 ATGGTTTCCGACGCCAGCAAGAAGAAGGCCGCTCAAAAGAAGGCGGCGGCCGCTGCCAAGAGAGGTGGAAAAGCAGCTGCAACCTCCTCAAAAGCAGCGG CGGCTGCCGATTCGCAGAATGGAGGTGTTGATAAGTTGTCGAATGGAGTTGGAGCTCTTCAGATTTCCGATCGGACTTGTACTGGCGTCCTATGCTCGCA TCCTCTTTCTAGAGATATCCGCATTGAATCATTGTCAGTTACTTTTCATGGACATGATCTCATTGTTGATTCTGAGCTGGAGCTAAACTATGGCAGACGA TATGGATTACTTGGTTTAAATGGATGTGGGAAATCAACACTCCTAGCTGCAATAGGGTGTCGAGAGCTTCCAATTCCAGAGCACATGGACATATATCACC TCACCAGGGAGATCGAAGCTTCTGACATGTCTTCACTTGAGGCTGTGATAAGCTGTGATGAGGAGAGGTTGGAGTTGGAGAAAGAAGCAGAGGCCTTGGC TGCACAGGATGATGGAGGTGGAGAAGCTCTTGATCGTGTTTATGAGCGTTTGGAGGCCATGGATGTGGCAACTGCAGAGAAACGTGCTGCTGAAATTTTG TTTGGTCTTGGATTTAACAAGCAAATGCAAACAAAGAAAACTCGAGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTAGCTCGGGCTTTGTTCATGA ACCCAACTGTCCTCTTACTTGATGAGCCAACCAATCATCTTGACCTCGAAGCCTGTGTCTGGTTGGAGGAAACTTTAAAGAACTTTGAACGCATTCTAGT TGTGGTTTCTCACTCTCAGGATTTCTTGAATGGAGTCTGCACAAACATTATCCACATGCAAAGCAAGAAATTGAAAATCTACACTGGTAACTATGATCAG TATGTTCAGACTCGTTCTGAACTGGAAGAAAACCAGATGAAACAGTACAAATGGGAGCAGGATCAGATTTCTTCCATGAAGGAGTATATTGCCCGATTTG GGCATGGGTCAGCAAAGTTAGCTCGTCAGGCGCAGAGCAAGGAGAAAACTCTTGCTAAGATGGAACGCGGTGGACTTACAGAAAGGGTTGCGAGAGACCA GGTTCTGGTCTTTCGCTTTGTTGATGTGGGGAAGCTCCCACCACCCGTGCTTCAGTTTGTTGAAGTAACCTTTGGCTACACACCTGATAACCTCATTTAT AAGAATCTTGACTTTGGTGTGGATCTGGACTCTAGGGTTGCGCTGGTTGGCCCCAACGGAGCTGGAAAGAGTACCTTGCTGAAGCTTATGACGGGTGACT TGGTTCCTTTAGATGGCATGGTTCGCCGGCACAATCACTTGAGGATTGCGCAATTTCATCAACACTTGACTGAGAAACTAGACTTAGAATTGTCTGCTCT CCTTTTTATGATTAGAGAGTATCCAGGGAATGAGGAAGAAAAAATGAGGGCAGCGATTGGGAAGTTTGGGTTGACAGGCAAGGCCCAGGTGATGCCCATG AGTAATTTGTCAGATGGGCAGAGGAGCAGGGTGATTTTTGCTTGGCTGGCATTTAGGCAACCCCAAATGCTCCTTCTGGATGAGCCAACCAACCATTTGG ATATTGAGACCATCGACTCCCTGGCAGAGGCATTGAAAGAGTGGGATGGGGGTCTGGTTCTTGTTAGCCATGATTTCAGGCTCATAAACCAGGTAGCGCA GGAGATATGGGTATGTGAGAATCAAGCTGTTACCCGTTGGGAGGGCGACATTATGGAATTCAAGGCGCACCTCAAGAAGAAGGCAGGGTTGTCGGATTGA
AA sequence Show only first row Show all	>Potri.009G007800.2 pacid=42772661 polypeptide=Potri.009G007800.2.p locus=Potri.009G007800 ID=Potri.009G007800.2.v4.1 annot-version=v4.1 MVSDASKKKAAQKKAAAAAKRGGKAAATSSKAAAAADSQNGGVDKLSNGVGALQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRR YGLLGLNGCGKSTLLAAIGCRELPIPEHMDIYHLTREIEASDMSSLEAVISCDEERLELEKEAEALAAQDDGGGEALDRVYERLEAMDVATAEKRAAEIL FGLGFNKQMQTKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEETLKNFERILVVVSHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQ YVQTRSELEENQMKQYKWEQDQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVARDQVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIY KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALLFMIREYPGNEEEKMRAAIGKFGLTGKAQVMPM SNLSDGQRSRVIFAWLAFRQPQMLLLDEPTNHLDIETIDSLAEALKEWDGGLVLVSHDFRLINQVAQEIWVCENQAVTRWEGDIMEFKAHLKKKAGLSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.009G007800 [exp]	0	1	Pt-PNATH.1
AT3G59800			unknown protein		Potri.017G010100 [exp]	1.73	0.8533
AT3G52220			unknown protein		Potri.008G019100 [exp]	5.29	0.8485
AT4G03420			Protein of unknown function (D...		Potri.013G144000 [exp]	7.74	0.7915
AT3G15140			Polynucleotidyl transferase, r...		Potri.001G030900 [exp]	7.93	0.7656
AT1G11320			unknown protein		Potri.005G242900 [exp]	9.48	0.7992
AT1G64140			unknown protein		Potri.003G134200 [exp]	10.95	0.7814
AT3G05700			Drought-responsive family prot...		Potri.013G011200 [exp]	11.13	0.8128
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	11.22	0.7753
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	13.41	0.7746
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	14.69	0.8254

Compare expression of checked genes

Potri.009G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.