Plant FIBer expression Database

Potri.009G007900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45040 644 / 0 phosphatidate cytidylyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041335
[exp]
672 / 0 AT3G45040 638 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
Lus10037383
[exp]
665 / 0 AT3G45040 632 / 0.0 phosphatidate cytidylyltransferase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G007900.2 pacid=42772904 polypeptide=Potri.009G007900.2.p locus=Potri.009G007900 ID=Potri.009G007900.2.v4.1 annot-version=v4.1
ATGGCCGCTGTCTCGTTTTCGCAGTTACTTAACGGCGAGAGAGCGGTGGTTACGCTTTTTATTGTCATCGTCCTCTTCTCTCTCCCTCTTTCTCTTCTCT
TACACGGCGTCGCTCTCTCTCTCCTCGCTCTCTTTGCTCTCTCCGTCGAGGTCCGTGTCGAGACTTCCACTTCCTTGTCTCAATTCAAAACCAGGGCAGG
TGCTTCGTCAGGGCTACTATTAGGTGCAGTTACATTACCAACTTTTATGCTTTCAAAATTGATACAGCAATCAAGAGCCTTCTCATTGAATCAAGTTCAT
CCTGGAGAACTTAATTACCTGGCGTTGCAATACTGGGCTGCATTTGGTAGCTGCTTCACTGTGCTTATGGTGCTCTGCTTACTTACATTGGACAATACAC
GAAGCCGTTCATGTCAGGCATGGAATGTTAAGTTTGGCTTAGTATGTTTTGTGATTGGTGCAGCCCTATTATTTTTGTATAGTACTACTGGTTTGCATGC
AATATGGAAACTTTTGTGGGTGTTTTTTCATGGATTCGCAGCAGTTAAGTTGGTGCAGCATCTCCTTAATACTTTTCCTTCATGCGTTTCCTTTGGGGAA
GCACTTCTGGTGACTGTGGGTCTTGTACTCTACTTTGGTGACATGTTGGCCTATACCATTGAAAAGCTTTATGGATACATGACTTCGTCAGAATTAGTCT
TTATGCAATATGGATTTAGGAGAAGTGAGATTGGCATTATCATTCAGGGTCTACTTCTCGGCCTTCTCCTCTACCTAGTTGTCTTGAAATATTTGCTCTG
TGGATGGGATGGCTTTTCAAGATCAACCTACTCTGGAGCAAGGATATGTAGTGAGAAAGGGAAATCTCTTATATTCTTCGCTTCCCTTGGTTTTTTGATT
GTTGTGATCATCCCTTCATGGATGCAGTTTGTACAGGATTTTGACATGCATCCACTGTTGTGGGTGGTTAGATTTGTTTTTATGGAACCAGTTAAAAGAC
TATCACTCTGTCTCTATTGGGTGTGTGTGATATATCTTTCTGTTCTGCGATTCTATAACATATCCAAGAATAGTAAGATTGAGAGGATTCTTCTTCGAAA
GTACTACCATCTAATGGCTGTTTTAATGTTTCTGCCTGCTGTTATCTTACAGCCTAAGTTTCTTGATCTGGCATTTGGTGCAGCCTTGGCAGTTTTCTTG
ACTTTGGAAATTATTCGAGTTTGGAGAATTTGGCCTTTGGGACAGCTTGTGCATGAATTTATGAATGCTTTCACAGACCATCGTGACTCTGACCTCCTCA
TTGTCAGCCACTTTTCACTTTTACTGGGATGTGCACTTCCTATCTGGATGTCTTCTGGATACAATGATCGACCCCTTGCTCCTTTTGCTGGAATTTTGAG
CCTTGGAATTGGGGATACAATGGCTTCAATGGTTGGCCACAAATATGGTGTCCTCAGGTGGAGCAAAACTGGGAAGAAAACCATTGAAGGCACTGCAGCT
GGTATAACATCAGTCCTTGCTGCTTGCTCAGTATTGCTTCCGCATTTAGCATCCACTGGATATTTTCTTACTGAGCATTGGATCTCTCTTCTCCTAGCTG
TAACAGTGAGTGGCTTGTTGGAGGCCTACACGGCACAACTTGATAACGCATTCATACCACTTGTTTTCTACAGCCTTCTATGTTTGTAA
AA sequence
>Potri.009G007900.2 pacid=42772904 polypeptide=Potri.009G007900.2.p locus=Potri.009G007900 ID=Potri.009G007900.2.v4.1 annot-version=v4.1
MAAVSFSQLLNGERAVVTLFIVIVLFSLPLSLLLHGVALSLLALFALSVEVRVETSTSLSQFKTRAGASSGLLLGAVTLPTFMLSKLIQQSRAFSLNQVH
PGELNYLALQYWAAFGSCFTVLMVLCLLTLDNTRSRSCQAWNVKFGLVCFVIGAALLFLYSTTGLHAIWKLLWVFFHGFAAVKLVQHLLNTFPSCVSFGE
ALLVTVGLVLYFGDMLAYTIEKLYGYMTSSELVFMQYGFRRSEIGIIIQGLLLGLLLYLVVLKYLLCGWDGFSRSTYSGARICSEKGKSLIFFASLGFLI
VVIIPSWMQFVQDFDMHPLLWVVRFVFMEPVKRLSLCLYWVCVIYLSVLRFYNISKNSKIERILLRKYYHLMAVLMFLPAVILQPKFLDLAFGAALAVFL
TLEIIRVWRIWPLGQLVHEFMNAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGYNDRPLAPFAGILSLGIGDTMASMVGHKYGVLRWSKTGKKTIEGTAA
GITSVLAACSVLLPHLASTGYFLTEHWISLLLAVTVSGLLEAYTAQLDNAFIPLVFYSLLCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45040 phosphatidate cytidylyltransfe... Potri.009G007900
[exp]
0 1
AT2G44500 O-fucosyltransferase family pr... Potri.001G227000
[exp]
2.64 0.8256
AT5G56140 RNA-binding KH domain-containi... Potri.001G471000
[exp]
3.74 0.7931
Potri.015G112801
[exp]
11.09 0.7770
AT1G55535 unknown protein Potri.001G001400
[exp]
14.28 0.7448
Potri.005G203550
[exp]
16.43 0.7654
AT5G47530 Auxin-responsive family protei... Potri.010G156200
[exp]
17.66 0.7353
AT5G25280 serine-rich protein-related (.... Potri.006G258600
[exp]
20.49 0.7326
AT3G56930 DHHC-type zinc finger family p... Potri.016G025100
[exp]
20.56 0.7589
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Potri.003G202500
[exp]
35.49 0.7200
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.006G085500
[exp]
41.35 0.7440 CYP716A8

Potri.009G007900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.