Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28080 622 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 602 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 259 / 7e-81 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 255 / 3e-79 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 249 / 8e-77 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 239 / 4e-73 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 237 / 2e-72 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT4G15480 230 / 1e-69 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 226 / 1e-68 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 226 / 1e-68 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214100 [exp] 752 / 0 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 261 / 3e-82 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.005G073766 [exp] 252 / 3e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 252 / 3e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032300 [exp] 249 / 3e-77 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G312600 [exp] 249 / 8e-77 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 247 / 2e-76 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 246 / 8e-76 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023101 [exp] 244 / 3e-75 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016128 [exp] 663 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 657 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 639 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 628 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 504 / 4e-178 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 249 / 8e-77 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 249 / 8e-77 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 249 / 1e-76 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 245 / 1e-75 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024584 [exp] 242 / 3e-74 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G008100.1 pacid=42772722 polypeptide=Potri.009G008100.1.p locus=Potri.009G008100 ID=Potri.009G008100.1.v4.1 annot-version=v4.1 ATGGTAGATCAGACATCCAAGAAACCCCATGCCATCCTCGTACCCTACCCTCTTCAAGGCCATGTCATCCCATCAGTTCACCTTGCCATCAAGCTTGCAT CTCAAGGTTTCACCATCACCTTCATCAACACCCACGCCTTCCATCACCAAATCTCCAAGGCTCAGCCCAATAGTGAACCCGACATCTTCACCAAGGTCCG AGAATCAGGGCTTGATATTCGGTACGCAACTATATCCGACGGGCTTCCTGTTGGGTTCGACCGGTCGTTGAACCATGACCAGTATATGGCAGCCCTATTG CATGTGTTCTCGGCCCATGTGGATGAGGTGGTCGGCCAGATTGTAAAGTCTGATGACAGTGTTCGATGTTTGATTGCTGACACATTTTTTGTATGGCCAT CGAAGATTGCAAAGAAGTTTGGTTTGCTCTACGTTTCCTTTTGGACAGAACCAGCTTTGGTGTTTTCCTTGTATTACCATATGGATCTTCTAAGGATAAA TGGTCATTTTGGTTGTCAAGATTGCCGGGAGGACATCATAGATTACATACCAGGAGTTAAGGCAATAGAACCGAAGGACATGACATCATATCTTCAAGAG GCAGAGACAACTTCAGTTTGCCATCAAATCATTTTCAATGCCTTCAACGACACTAGAAGTGCAGATTTTGTTGTATGCAATTCGGTGCAGGAACTTGAGG TCGAGACTTTGTCAGCTCTACAAGCCGAAATGCCCTACTATGCAATTGGACCCCTTTTCCCTAATGGCTTCACCAAGAGCTTTGTGGCCACTAGCCTGTG GTCCGAGTCCGATTGCACCCAGTGGCTTGACGAAAAGCCTCGTGGCTCAGTCTTGTATGTTTCATTTGGTAGCTACGCACATGTTACAAAAAAGGACCTT GCACAGATTGCAAATGGGCTTTCCCTTAGCAAAGTGAGTTTTGTTTGGGTGCTTCGAGCTGATATTGTGAGCTCTGATGATGCTCATCCCCTGCCTGATG GATTTGAGGAAGAGGTTGCTGACCGCGCGATGATCATACCTTGGTGCTGTCAAAGAGAAGTGTTGCCCCACCATGCGATCGGAGGGTTCTTAACACATTG TGGATGGAATTCCATTCTAGAAAGTATATGGTGTCAAGTTCCATTACTGTGTCTCCCTTTGCTGACCGACCAATTCACTAATAGGAAATTAGTGGTTGAT GACTGGAAGGTAGGGATCAATTTGAGTGATAGAAAGTTTGTCACTAAAGAGGAAGTTTCAAGCAATATCAACAGTTTGTTCAGTGGAAAATTAGGGGACG AATTAAGAACCAAAATCAAGGAGGTGAAGAAAACATTAGAAAATGCGTTGTCACCCGGAGGATCCTCAGAGAAAAATATGGCTCAGTTCATCAAGGACCT AAAGAATAAGATTAGTGACAAGATGGACCAACCAAACAAATCCATTTGCAACGACAGCTAA
AA sequence Show only first row Show all	>Potri.009G008100.1 pacid=42772722 polypeptide=Potri.009G008100.1.p locus=Potri.009G008100 ID=Potri.009G008100.1.v4.1 annot-version=v4.1 MVDQTSKKPHAILVPYPLQGHVIPSVHLAIKLASQGFTITFINTHAFHHQISKAQPNSEPDIFTKVRESGLDIRYATISDGLPVGFDRSLNHDQYMAALL HVFSAHVDEVVGQIVKSDDSVRCLIADTFFVWPSKIAKKFGLLYVSFWTEPALVFSLYYHMDLLRINGHFGCQDCREDIIDYIPGVKAIEPKDMTSYLQE AETTSVCHQIIFNAFNDTRSADFVVCNSVQELEVETLSALQAEMPYYAIGPLFPNGFTKSFVATSLWSESDCTQWLDEKPRGSVLYVSFGSYAHVTKKDL AQIANGLSLSKVSFVWVLRADIVSSDDAHPLPDGFEEEVADRAMIIPWCCQREVLPHHAIGGFLTHCGWNSILESIWCQVPLLCLPLLTDQFTNRKLVVD DWKVGINLSDRKFVTKEEVSSNINSLFSGKLGDELRTKIKEVKKTLENALSPGGSSEKNMAQFIKDLKNKISDKMDQPNKSICNDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28080			UDP-Glycosyltransferase superf...		Potri.009G008100 [exp]	0	1
					Potri.001G020250 [exp]	3.87	0.9479
					Potri.013G126450 [exp]	5.29	0.8305
					Potri.012G119350 [exp]	8.66	0.9479
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Potri.001G144933 [exp]	9.89	0.9383
					Potri.002G111832 [exp]	11.66	0.9369
					Potri.002G047750 [exp]	12.24	0.9222
AT5G12260			unknown protein		Potri.012G123450 [exp]	16.30	0.8984
					Potri.008G139250 [exp]	18.49	0.8836
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.001G416500 [exp]	19.44	0.7670
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.008G099201 [exp]	19.49	0.8744

Compare expression of checked genes

Potri.009G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.