Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60720 537 / 0 Protein of unknown function, DUF547 (.1) AT2G39690 272 / 2e-85 Protein of unknown function, DUF547 (.1.2) AT3G12540 232 / 5e-69 Protein of unknown function, DUF547 (.1) AT5G42690 229 / 5e-68 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 211 / 2e-60 Protein of unknown function, DUF547 (.1.2.3) AT1G16750 150 / 7e-39 Protein of unknown function, DUF547 (.1) AT5G47380 150 / 1e-38 Protein of unknown function, DUF547 (.1) AT2G23700 141 / 3e-35 Protein of unknown function, DUF547 (.1) AT3G13000 136 / 4e-34 Protein of unknown function, DUF547 (.1.2) AT5G66600 136 / 8e-34 Protein of unknown function, DUF547 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202900 [exp] 277 / 6e-86 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.014G034800 [exp] 239 / 2e-71 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.005G130000 [exp] 151 / 5e-39 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 147 / 2e-37 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 145 / 6e-37 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 144 / 2e-36 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 139 / 5e-35 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 139 / 1e-34 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.004G150000 [exp] 138 / 2e-34 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021450 [exp] 665 / 0 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 387 / 1e-132 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10021756 [exp] 216 / 1e-61 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10032768 [exp] 212 / 3e-61 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10016786 [exp] 149 / 5e-38 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 148 / 9e-38 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10039917 [exp] 146 / 4e-37 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 144 / 2e-36 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 140 / 4e-35 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10007795 [exp] 134 / 8e-33 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.009G009500.1 pacid=42772627 polypeptide=Potri.009G009500.1.p locus=Potri.009G009500 ID=Potri.009G009500.1.v4.1 annot-version=v4.1 ATGGCCAGCCAGGGCGACGTGCCACTAGATATTAGAAGAAAGAAAATCAGTGGGCAGCAAAAAAGGGAGGCTCTGGAAAGAGAGATTTCCATGCTTCAGA AAATGCTGAAACAAGAAGAAAATGTGCATGAGATTTTGGATCGTATGCATAACAAGGATGATGGTTCTGGGATCCCTCTCCCAGACTTCCTTCCTCCTAA GATGAAAGAGCTCTTAACAGAGTTGGTCATGGTTGAGGGTGAGATAGCTCGATTGGAAGGTCAATTAAGCCAACTTCAACTGGGTCTGAAACACGAAGAG ACAATTCCTAAGGATGCAAAATCAAAACAACTGCAACCTGCTGGAAATCGAAGCAACCTCCAAGGCCATATGTCCTACACAGCTTGTCCAAGCCCCTTCA TCATAAAAGGCGTTCAAGATAAAATGGCATTTGAGACCAAGGCATTACATTTTATAAGTAAAGCAATTAAGGGTGACTATAATCTTAATGACTTCAATCC AAATGAGAAAATAGGAGCCTCGAGAGTATTTTCTGATCAGAAAGAAAACCACTTCCATGAGGAGGTTAAATTTCAAGACAGGGTTCCAAAAAAAAGTGGG ATACTGAAGGCACCTTCACCTTTACGAGATCCTAGACATCCCTCCCCCAAGCCGAGAGAACGTAATGCGCAGGTCCCCTTGGACCTCTTATCGAAATCAC TGTCTAATTCAATTCTATCAGAAGATAACATTCAACAGCTGCAACCCAACAGGCTATCTGAGAACATCATGAAGTGTTTGAACTTCATATATGTCAGGTT ACTGAGGACATCAAGAGCAATGGAACTGGAGAAATCAGGACCTATTTCCAGATCTTTGAACTCTTCTATGATATCAAGAAGTTTCAGGGCCGAGAACAGC ATGAACTCAAAGTCGAACCTTCTGTTACAGAAGGAATCAAGACAACAGGATCCATATGGTATCTTTAATGTGGAAGAGTCTATTCCTAGGGATATAGGTC CTTATAAGAACTTGGTTATGTTCACATCAAGCTCCATGGACCCCAAATGGATTTCACATTCTAGTTCTATTCCTCTCTTGAAAAAGTTAAGGGTGTTAAT GAACAATCTCCAGACTGTAGACTTGAGATTCCTGACTTACCACCAGAAACTAGCATTCTGGATCAACATGTACAATGCCTGTATCATGCATGGATTTATT CAGTACGGAGTACCTTCTACACCAGAAAAACTGTTCACATTGATTAACAAGGCAACACTCAACATAGGAGGCAACACTATCAATGCTCAAGCAATAGAGC ATTATATTTTGAGGAAGCCAGCATCTTCAAACGAGGTTAATCAAAAGAAAGAAAAAGATGATAAAGAAGCTGTTGTTCGTAAACTTTATGGACTGGAATC GATGGATCCTAATATCACATTTGCTCTTTGTTGTGGAACTCGTTCATCTCCTGCTGTAAGAGTGTATACAGCTGAAGGTGTCATAGCTGAGTTGGAGAAA TCAAAGTTAGAGTATCTGCAGGCTTCAGTAGTGGTTACTAGCACAAAAAAGATAGCATTCCCTGATCTTCTACTTCGAAACACGCTTGATTTTGCAATGG ACACGGACACGTTAGTTGAATGGGTTTGTCATCACTTACCTACATCTGGGACACTGAGGAAATCAATAGTGGATTGCTTCAGGGGCCATAACAGTGGCAA AATACCCTGCATTACTGTTGAGAAGATACCATATGACTTCGAATTCCAGTATCTATTGGCAATATAG
AA sequence Show only first row Show all	>Potri.009G009500.1 pacid=42772627 polypeptide=Potri.009G009500.1.p locus=Potri.009G009500 ID=Potri.009G009500.1.v4.1 annot-version=v4.1 MASQGDVPLDIRRKKISGQQKREALEREISMLQKMLKQEENVHEILDRMHNKDDGSGIPLPDFLPPKMKELLTELVMVEGEIARLEGQLSQLQLGLKHEE TIPKDAKSKQLQPAGNRSNLQGHMSYTACPSPFIIKGVQDKMAFETKALHFISKAIKGDYNLNDFNPNEKIGASRVFSDQKENHFHEEVKFQDRVPKKSG ILKAPSPLRDPRHPSPKPRERNAQVPLDLLSKSLSNSILSEDNIQQLQPNRLSENIMKCLNFIYVRLLRTSRAMELEKSGPISRSLNSSMISRSFRAENS MNSKSNLLLQKESRQQDPYGIFNVEESIPRDIGPYKNLVMFTSSSMDPKWISHSSSIPLLKKLRVLMNNLQTVDLRFLTYHQKLAFWINMYNACIMHGFI QYGVPSTPEKLFTLINKATLNIGGNTINAQAIEHYILRKPASSNEVNQKKEKDDKEAVVRKLYGLESMDPNITFALCCGTRSSPAVRVYTAEGVIAELEK SKLEYLQASVVVTSTKKIAFPDLLLRNTLDFAMDTDTLVEWVCHHLPTSGTLRKSIVDCFRGHNSGKIPCITVEKIPYDFEFQYLLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60720			Protein of unknown function, D...		Potri.009G009500 [exp]	0	1
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.008G182700 [exp]	2.00	0.9410
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.017G075600 [exp]	4.58	0.9057
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	6.24	0.9320
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	6.48	0.9393
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	8.00	0.9314
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	8.30	0.9024
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	10.48	0.9163
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.005G065200 [exp]	12.00	0.9166
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	12.84	0.8967	Pt-MOR1.1
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	14.07	0.9268

Compare expression of checked genes

Potri.009G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.