Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) AT1G51940 145 / 7e-38 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G02800 125 / 7e-32 Kin2, APK2B protein kinase 2B (.1.2) AT2G33580 124 / 1e-30 Protein kinase superfamily protein (.1) AT1G01540 122 / 3e-30 Protein kinase superfamily protein (.1.2) AT1G24030 120 / 3e-30 Protein kinase superfamily protein (.1.2) AT2G28930 119 / 1e-29 APK1B protein kinase 1B (.1.2.3) AT5G48740 121 / 2e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G56720 120 / 2e-29 Protein kinase superfamily protein (.1.2.3) AT3G21630 120 / 3e-29 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037501 [exp] 417 / 1e-143 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 396 / 2e-135 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 387 / 3e-132 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 153 / 1e-40 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 135 / 2e-34 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 135 / 4e-34 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.T125208 [exp] 131 / 5e-33 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 130 / 9e-33 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 130 / 2e-32 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016113 [exp] 486 / 6e-169 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10038716 [exp] 392 / 7e-133 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10021451 [exp] 268 / 2e-88 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10027054 [exp] 211 / 4e-64 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011517 [exp] 184 / 4e-53 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10011518 [exp] 181 / 3e-52 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10006841 [exp] 160 / 5e-43 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 159 / 2e-42 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10029720 [exp] 154 / 2e-42 AT3G57120 142 / 6e-38 Protein kinase superfamily protein (.1) Lus10041171 [exp] 134 / 6e-34 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G009600.1 pacid=42772104 polypeptide=Potri.009G009600.1.p locus=Potri.009G009600 ID=Potri.009G009600.1.v4.1 annot-version=v4.1 ATGTGCAAAACCAAAATGGCTGTCAGCGCGTCCGAACCAACTCCCGTCTCAACCCGAACTCGTCCAACTCAATCACCTAGAACTCGCCCAACTCAGTCTC CTAGACCCACCACCATCACCACCGCTTCTACCTCCTCAGATCCTTCGACGTCTAACACCATTAATTACACAACAACAACATCTTCTACTCTTTCAAACCG AACCTCTCTTTCCAACCTCCGTGATTCCCTCTCTCAAAACCCCAACGTCTACGACATTTCCGAAATTCGTACAGCCACCAACAACTTCCTGTCCAAACGC CACTCCTCCTCCTCCTCCTCCTCCACCGCTTGCTGGCGTTGCGACTTGCGGAACAACAACACCATCATCTTCCAACGCAAGTTCCGCCGCAAAATTGAAA TGTCTCAACTGAAAGAACAGCTTTCAGTAATTTGTAGAAGTAATCACTCAAGCGTGGTAAAGCTCTTAGGAGCTTCCATATCTGGAGATTATATCTACCT CGTTTATGAATTCATTCCCGGCGCAAATCTTTCTAATTGCTTGAGAAATTCTAAAAACCCCAACTTCACTGTTCTTTCGACATGGGTTTCAAGAATGCAG GTGGCCGCTGATCTTGCGTACGGTCTTGATTACATCCACAACAAAACTGGCTTAAACATAAGCTTGGTACACAACCACATTAAAAGCAGCAGTATCATTA TCACAGAGCCGTCTTTTAATGCTAAAATCTGCCATTTTGGGTGTGCCCAGTTGTGTGGAGAAGCCGATGAGAATGAGATGATGATGAAGAAAAAAAGCAA GATCGGTGAAATCACTGAACTGGATGATGATCGTTCGCTAAAAGGGTCGAAAGAGTTGGCGAGGTCTAACAGCGGGATCATGCAATTCGAAGGCGTGAGA GGATACATGTCGCCGGAATATCAAGCTACGGGAATAGCAACACAGAAATCGGACGTTTACGCATTTGGGGTGGTGTTATTGGAGTTGTTGTCCGGTAAAG AGCCATATAAGTACAAGTATGACAAAAGCAGAGGTGATTATATGAGGGAGTCGGTGATTGAGACCGCCAGAGCGGCGATTGGTGACCGGGGGGGGTTGAG GAGGTGGATTGACGGGAGGCTTAAGGACTCGTTCCCAGTGGAAGTAGCAGAGAAGATGACACGTGTAGGGTTAGATTGTGTGGAAGTGGATCCAGATAAG CGGCCAGATATGGGACGCGTGGCGGGGAAGATTTCGAGGTGGTATCTGGAGTCGAGGAAGTGGGCTGAAGATTTGAGATTTTCTGACCAGATTACTGTTT CTTTGGCTCCTCGATAG
AA sequence Show only first row Show all	>Potri.009G009600.1 pacid=42772104 polypeptide=Potri.009G009600.1.p locus=Potri.009G009600 ID=Potri.009G009600.1.v4.1 annot-version=v4.1 MCKTKMAVSASEPTPVSTRTRPTQSPRTRPTQSPRPTTITTASTSSDPSTSNTINYTTTTSSTLSNRTSLSNLRDSLSQNPNVYDISEIRTATNNFLSKR HSSSSSSSTACWRCDLRNNNTIIFQRKFRRKIEMSQLKEQLSVICRSNHSSVVKLLGASISGDYIYLVYEFIPGANLSNCLRNSKNPNFTVLSTWVSRMQ VAADLAYGLDYIHNKTGLNISLVHNHIKSSSIIITEPSFNAKICHFGCAQLCGEADENEMMMKKKSKIGEITELDDDRSLKGSKELARSNSGIMQFEGVR GYMSPEYQATGIATQKSDVYAFGVVLLELLSGKEPYKYKYDKSRGDYMRESVIETARAAIGDRGGLRRWIDGRLKDSFPVEVAEKMTRVGLDCVEVDPDK RPDMGRVAGKISRWYLESRKWAEDLRFSDQITVSLAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57120			Protein kinase superfamily pro...		Potri.009G009600 [exp]	0	1
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	13.82	0.7390
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.003G074400 [exp]	21.97	0.6302
					Potri.019G106950 [exp]	73.21	0.6034
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Potri.002G216466 [exp]	80.05	0.6601
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Potri.005G227600 [exp]	84.32	0.6248
AT1G54215			proline-rich family protein (....		Potri.003G064900 [exp]	92.12	0.6464
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.008G008626 [exp]	119.85	0.6229
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	145.24	0.5693
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	190.48	0.5883
AT3G01060			unknown protein		Potri.004G125301 [exp]	212.44	0.5936

Compare expression of checked genes

Potri.009G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.