Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27990 281 / 2e-84 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT4G34610 223 / 1e-63 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 211 / 9e-60 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G36870 214 / 6e-59 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT1G75410 209 / 1e-58 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT5G02030 207 / 1e-57 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G35940 209 / 2e-57 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G23760 207 / 5e-57 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT1G19700 202 / 3e-56 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT5G41410 198 / 4e-54 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G213300 [exp] 1247 / 0 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 861 / 0 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.010G197300 [exp] 223 / 2e-64 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.008G061000 [exp] 223 / 4e-64 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.009G120800 [exp] 227 / 9e-64 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.004G159300 [exp] 226 / 1e-63 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.006G203000 [exp] 220 / 2e-61 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 218 / 1e-60 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 217 / 7e-60 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021452 [exp] 292 / 6e-90 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10016110 [exp] 278 / 7e-85 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10022599 [exp] 265 / 4e-78 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 263 / 4e-77 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10028802 [exp] 224 / 6e-63 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 220 / 1e-61 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 219 / 5e-61 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 213 / 8e-59 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 213 / 1e-58 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 196 / 2e-54 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.009G009800.1 pacid=42770997 polypeptide=Potri.009G009800.1.p locus=Potri.009G009800 ID=Potri.009G009800.1.v4.1 annot-version=v4.1 ATGGAAACAAGAAGTTTTAGGCCTGAATCACATGTAGCACAGCAAAGCCGGAGAGATAAGTTGAGAGGTCAACAGAGTTTAACCTCAGTTCAGTATTTAG ATGACTACCCTAACAGTTTGGAACGTATATCTGTCAGTCCAGGGCTAAGCCCAGATCTTGTTCACGTTCGAAATAATAGGAATGACAATACGATTTATGA TTCCACTATGTTTTCCTCAGAAATTCTCAATTTTGCAACAAGTTCTCATGTTCTATCAGCTCCTAAAGTTTCAATTGTTGATCAAGAACTAGGTGCAGTT CCGCTCAATAGGCCTATACTTGCCGAGGATTCTTCTTTCACTGGTATGACGTCTCACCCAGTTTTATCCAACTTCAATGCTTCACACAAGGCCAGTAGCT GTGACCCACAAGGTTGTGGTAATTGGAGAAGCCTTGACTCACAGCAAAGTTATGATTTGATGGTGAATTATGCAGGTGGATCAGTAGGTGGGGAAAGAAA TCAGAAACCTATGTTTGTTGGGGAAGTCTTGTCAAATAATGCAAGGGTAAGCAACATTTCAACATCTAGACAATATTTGATGCCTGGTTACAATGGAAAC CAGAATGTTCAGCTTCCATCTACGTTAAGAAATACCTTTGGTGAAATTTCAAGTGAAGATAGCATCAAGCAGTTGAGGGTGATGCAGGTTCCTTCTCTTC CACCATACCAAAACGCAGCCCAAGATGTCATTCCTTCTGGTTGTTTTAGGCCCAGAATGAATGAACGCATTCTCCATCCATCTTTTGTAACTGAATCAAC TGCTTCACATTTTGATAATAATGGCAGTACTTGGATGAGCAGACCACTTGAGAACTACCATCACTGGAGTACTGGTGAGTTGGGTCTTGTTGAAAGGACG AGTGACCAAGAGATGATGACTATTACAAGTGATGCTAATACTCAGGGTTTATCTTTGTCGCTTTCATCAATTAATCCACCATCTAAAGTTGAAGTTACCC ATTTTGGAGAGGAATATGCATCTGAACATTTGCAATTGAAGGTGGCTGATCGTGTTTCCCAAGAATCTCATCAAGATTCAAAATTTTCTAAGTCAAGTTC TCTGTGTGCTTTGCCGAAGCCATCAATTATAACTAAAAGTTGTGGAAAATCGATTCATGACATCGTGGGGACTTCTACGCATGCTCTTCGCAACACTGGT CCTCTTGGACCTTTCACTGGATATGCAACTATTCTAAAGAGTTCAAAATTCTTGAAGCCAGCTCAGCAACTGCTGGAAGAATTCTCTAGTAGAACAGGTC CAAAACTCACGAGAATATTTGAGATGTCTGAAGATCAAGTTACTGCTCCAGCTTTGGCTGACATTGTTAATGAAGCCAATGAAAATTCTGGAACTAACGC CAAGAATTACTCAGGCATCCCATCCTCTACATTTTACTGTTCAAATAAGGCAAGTGGTGGTGATGATGTAGGTGGAAGCGGCGGCTCTTGTGGATCTTAT GGGCCAGAATACCAACAAAAGAAGGCAAAGCTCCTGTTCTTGCAAGAGGAGGTTTGCAGAAGGTACAAGCAATATCATCAACAGATGCAAATGGTAGCTT CTTCTTTTGAATCAGTGGCTAGTCTCAGTGCTGCCACCCCGTATGTTTCCTTGGCTCTCAAGACAGTCTCTAGCAATTTCAGGTCTCTGAAACATGGCAT CTCAGACCAACTCAAGCTCGTGACGAAAGCCCTAGGAGACGATCTTTTCTCCCGGAATACAGTTGCAGTGGGTAGTAAGGGTGATACAATTACATCAAGG TCAATATACATGGATCAAAGCATTCAAAAGAACAAATCTGGTGGGGTTAGTGTGGGTTACCATGAACCCCAACAACACATATGGAGGCCCCAAAGAGGCC TACCAGAACGTTCAGTTGCAATTCTTAGAGCTTGGCTGTTTGAGCATTTTCTACACCCGTACCCCACAGACACTGATAAGCACATGTTAGCTACGCGGAC AGGTCTATCTCGAAACCAGGTGTCAAATTGGTTCATTAATGCCCGCGTTCGCGTGTGGAAACCTATGGTTGAGGAAATACATATGCTTGAAACAAAAGGC TTGGCAGAAATTTCTGGAAAGAATGATGGAAATTCTCCAGAGGGTAATATCCAGTCAAATGATGAACAAACCTCAAACAAACTTGGTAAAAATTCCATGC TAAATAAACAATTGGAATGCTCTGGTATTGGTTCCTCTGGAAGCAGCGGTGAACAACTGGATGAGGAGCAATGGAGTGAAGGGAAGAGGTCAAGAGTAGA ATTTCAGGTTCCCACCACCATGGATGGATCATTGATGAATTTTCTGCCGTATCAGAGAAGTGGTATTGATAATGGTGGAGCTGTTTCCCTTACTTTGGGT CTCAGGCAAGGTATTGAAAGTGCGCAGCACCAAATACAATTGCAACAACACAATGGTCAGTTTAAGCAGTCATTTGGAGGTCAGATGATTCATGATTTTG TCGGTTGA
AA sequence Show only first row Show all	>Potri.009G009800.1 pacid=42770997 polypeptide=Potri.009G009800.1.p locus=Potri.009G009800 ID=Potri.009G009800.1.v4.1 annot-version=v4.1 METRSFRPESHVAQQSRRDKLRGQQSLTSVQYLDDYPNSLERISVSPGLSPDLVHVRNNRNDNTIYDSTMFSSEILNFATSSHVLSAPKVSIVDQELGAV PLNRPILAEDSSFTGMTSHPVLSNFNASHKASSCDPQGCGNWRSLDSQQSYDLMVNYAGGSVGGERNQKPMFVGEVLSNNARVSNISTSRQYLMPGYNGN QNVQLPSTLRNTFGEISSEDSIKQLRVMQVPSLPPYQNAAQDVIPSGCFRPRMNERILHPSFVTESTASHFDNNGSTWMSRPLENYHHWSTGELGLVERT SDQEMMTITSDANTQGLSLSLSSINPPSKVEVTHFGEEYASEHLQLKVADRVSQESHQDSKFSKSSSLCALPKPSIITKSCGKSIHDIVGTSTHALRNTG PLGPFTGYATILKSSKFLKPAQQLLEEFSSRTGPKLTRIFEMSEDQVTAPALADIVNEANENSGTNAKNYSGIPSSTFYCSNKASGGDDVGGSGGSCGSY GPEYQQKKAKLLFLQEEVCRRYKQYHQQMQMVASSFESVASLSAATPYVSLALKTVSSNFRSLKHGISDQLKLVTKALGDDLFSRNTVAVGSKGDTITSR SIYMDQSIQKNKSGGVSVGYHEPQQHIWRPQRGLPERSVAILRAWLFEHFLHPYPTDTDKHMLATRTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKG LAEISGKNDGNSPEGNIQSNDEQTSNKLGKNSMLNKQLECSGIGSSGSSGEQLDEEQWSEGKRSRVEFQVPTTMDGSLMNFLPYQRSGIDNGGAVSLTLG LRQGIESAQHQIQLQQHNGQFKQSFGGQMIHDFVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009800 [exp]	0	1
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	3.60	0.8715
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	6.32	0.8629
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	6.48	0.8161
AT3G14067			Subtilase family protein (.1)		Potri.001G167300 [exp]	8.71	0.7316
AT1G25530			Transmembrane amino acid trans...		Potri.010G128300 [exp]	9.05	0.7621
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	9.94	0.8364
AT5G03370			acylphosphatase family (.1)		Potri.006G124966 [exp]	12.64	0.8160
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	13.03	0.7714
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	13.56	0.7212
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.010G223900 [exp]	14.96	0.7738

Compare expression of checked genes

Potri.009G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.