Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27990 264 / 3e-78 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT4G34610 209 / 9e-59 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 205 / 9e-58 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G75410 206 / 1e-57 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT4G36870 206 / 4e-56 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT1G19700 201 / 9e-56 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G23760 201 / 5e-55 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G35940 201 / 8e-55 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT5G41410 200 / 8e-55 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT5G02030 197 / 5e-54 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G213300 [exp] 879 / 0 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009800 [exp] 865 / 0 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.010G197300 [exp] 223 / 3e-64 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.016G069700 [exp] 227 / 4e-64 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 225 / 7e-63 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.008G061000 [exp] 218 / 2e-62 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.006G203000 [exp] 222 / 4e-62 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 221 / 2e-61 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G120800 [exp] 218 / 7e-61 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021452 [exp] 278 / 8e-85 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10016110 [exp] 263 / 3e-79 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10022599 [exp] 265 / 3e-78 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 264 / 5e-78 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10028802 [exp] 221 / 9e-62 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 219 / 4e-61 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 219 / 5e-61 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 218 / 1e-60 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 216 / 5e-60 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10013579 [exp] 199 / 7e-55 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.009G009900.3 pacid=42771620 polypeptide=Potri.009G009900.3.p locus=Potri.009G009900 ID=Potri.009G009900.3.v4.1 annot-version=v4.1 ATGGAAACAAAGAGTTTTCAGCCTGAAACACATGTCGCACAGCGAAGCCGGAGAGATAAGTTGAGATTTCAGCAAAGTTTAACTTCAGTCCAGCATCTAG AGGACTTCGGTAATGATTTGGATCAGTTGGCAGTTGATCCGTTGCTAACCCCAGATCTTGTCCAGGTTCGACATTCTAGGAACGGAAACATGCTGTATGA CCCTACTTTTCTCTCCTCTGCAATGCTGGATTTTGCAACAAGTTCTAATGTTTTGTCAGCTCAAAGGGGAGCAATGGTTGATCAAGAACTAGGTCCAGCG CACCTCCATAGCCCCATTGCAGCTGAGGATTCTTCGTTCACCAACATGCCTCACCCAGTTTTGTCAAACTTAAACGCTTCACCTACAGCCAGTAATGGTG ATGCTCAAGGATGTGGCAACTGGACAAAGCTAGGTTCAGAGCAAGGTTATGATTTGACTGTTGATTACACAGGTGGGTCGGTTGTTGGGGAGAGGAATCA GAAACTGATGTCTGCTGTGGAAGTCCTGTCAAATAATGCAAGGGTAACCGACATTTCTACGTATACACAATATTTCAAGCCTAGTTACAATGAATACCGA GATTTTGAGCTTCAATCTTCTCTAGCCGACCCCTCAGATGAGTTTTCTAGTCAAGATAACCAAAAGCAGCTCAGGGAAAGGCAGTTTACCACTCATCCAC TTCACCAAAATACACTGCAAGATGTTGTTACATCAGGATTGGTTGGGAGAACTAGAGAAATTATTCTCCATCCATCGTTTGAAAATCAATCATCCACTTT ACATTTTAATGACCCCAATGCCTGGATAAGAAGGCCGAATGAGAACTCTCATCAGTGGAGTTGTGAGTTGGGTCTTATTACAAGGAAGAGTTCCCAAGAG CTGAGGACTATTCCAAACGATGCTAACACTCAAGGCTTATCTTTGTCTCTTTCGTCAAATCAGTCATCTAAAGTCAATGAAACTCGGTTTGGAGAAGCAT ATGAATCTGAGTGTTTGCAATCAAAGAATGGTCTTTCCAAAGAACCTCATCATGTTTCAAAAGTTTCCAAGGCAAGTTATATGTGTCCATTGCCAAGGCC ATCAATTCTAAGTAAAGGTTGCGGAAAATCTTTACATGACTTACCAGGAGATGCTACAAATATTCTTCGAAATGCTGGTCCTCTTGGACCTTTCACTGGA TATGCAACTATTCTAAGTAGCTCTAGATTCTTAAAGCCAGCTCAAGAGCTAATGGACGAATTCTGTGGTGTTAAGGGTCTGGGGCTCATAAGAACATCTG AGTTGCCCAAGAGGATAGGTGGAGAAGCTAGTCCTCCAGCTTTGGGAGACTCTGTTAATGAAGCTGATACAGGGGACGAAGCTAATGATGACAATAATTT AGGTGCCTCACCCTTTACTTCTCGTAGATCAAATGAAGAAATTGGTCATTGTGGGGTAGGAAACAGTTCTTCAAAACCTTATATGCCAGAGTACCAACAA ATGAAGGCAAAGCTCCTATATTTGCAGGATGAGGTTCTCAGAAGGTACAAGCAATATCATCAGCAGATGGAAATGGTTGCTTCATTTTTTGAATCAGTTG CTGGTCTTAGTGCTGCCACCCAGTACATTTCCATGGCTGTAAAGGCAGTCTCAGGGAATTTTAGGTCCATAAAACATTGCATCTCTGATCAGCTCAAGCA TGTCACAAAAGCCCTAGGAGAGAATCTGTTCTCCCCAAATACATTTGGAAGCAGAACCGCGGGGAGCTTAAGATACAAGGATCAAAGCTTTCAAAAGAAC AACTCTGGTGGGCCAAATGTGGGTTACCTTGAGCCCCAAGAACACATCTGGAGGCCTCAAAGAGGCCTACCAGAACGTGCAGTAGTGATTCTCAGAGCTT GGCTGTTTGAGCATTTTCTTCACCCATACCCTACTGACACAGATAAGCACATGCTAGCCACTCAAACAGGTCTATCTCGATACCAGGTGTCAAATTGGTT CATAAATGCCCGGGTGCGCCTTTGGAAACCAATGGTTGAAGAAATACACACTCTTGAAACCAAAGGTTTGCTGGAAAACAATCGAAGTTCCGGGAAGAAT GGTGGGAATTCTGCTGAGGGTGCCAGCCAGCCAGATGGTGATCACCGAGCCTCCAAAGAGCTAGGTACAAGTTACATGCCTAGTAAACAATTGGAATGCT CTAGCAATATTGGCTCCTCAGGGGGCAGTAGAGATCAACTAGATGCCGAGCATTGGAATCAAGAGAAGAGATCGAGAGTGGAATCTCAGGCTCCGATACA TGCAGATAGATCGTTGATGAATTTTATGCTCTATCAAAAACCTGGGAGTGAAAATGGGGGCCTTGGCGCGGTTTCACTTACATTGGGTCTCAGACATGGT GCTGAAAATGCTCAACATGAACAATTGCAACAGTGA
AA sequence Show only first row Show all	>Potri.009G009900.3 pacid=42771620 polypeptide=Potri.009G009900.3.p locus=Potri.009G009900 ID=Potri.009G009900.3.v4.1 annot-version=v4.1 METKSFQPETHVAQRSRRDKLRFQQSLTSVQHLEDFGNDLDQLAVDPLLTPDLVQVRHSRNGNMLYDPTFLSSAMLDFATSSNVLSAQRGAMVDQELGPA HLHSPIAAEDSSFTNMPHPVLSNLNASPTASNGDAQGCGNWTKLGSEQGYDLTVDYTGGSVVGERNQKLMSAVEVLSNNARVTDISTYTQYFKPSYNEYR DFELQSSLADPSDEFSSQDNQKQLRERQFTTHPLHQNTLQDVVTSGLVGRTREIILHPSFENQSSTLHFNDPNAWIRRPNENSHQWSCELGLITRKSSQE LRTIPNDANTQGLSLSLSSNQSSKVNETRFGEAYESECLQSKNGLSKEPHHVSKVSKASYMCPLPRPSILSKGCGKSLHDLPGDATNILRNAGPLGPFTG YATILSSSRFLKPAQELMDEFCGVKGLGLIRTSELPKRIGGEASPPALGDSVNEADTGDEANDDNNLGASPFTSRRSNEEIGHCGVGNSSSKPYMPEYQQ MKAKLLYLQDEVLRRYKQYHQQMEMVASFFESVAGLSAATQYISMAVKAVSGNFRSIKHCISDQLKHVTKALGENLFSPNTFGSRTAGSLRYKDQSFQKN NSGGPNVGYLEPQEHIWRPQRGLPERAVVILRAWLFEHFLHPYPTDTDKHMLATQTGLSRYQVSNWFINARVRLWKPMVEEIHTLETKGLLENNRSSGKN GGNSAEGASQPDGDHRASKELGTSYMPSKQLECSSNIGSSGGSRDQLDAEHWNQEKRSRVESQAPIHADRSLMNFMLYQKPGSENGGLGAVSLTLGLRHG AENAQHEQLQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.010G070700 [exp]	5.47	0.7069
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	5.47	0.7159
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	7.07	0.7479
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	7.48	0.6787
AT4G02110			transcription coactivators (.1...		Potri.014G122400 [exp]	7.74	0.6653
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	13.41	0.6754	GSK1.2
AT1G59940		ARR3	response regulator 3 (.1)		Potri.010G037800 [exp]	13.52	0.5949
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	16.24	0.6795	Pt-HB1.7
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	17.23	0.6756
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	17.32	0.6931

Compare expression of checked genes

Potri.009G009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.