Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 234 / 2e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 178 / 5e-48 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G33580 170 / 4e-45 Protein kinase superfamily protein (.1) AT3G01840 168 / 2e-44 Protein kinase superfamily protein (.1) AT3G58690 131 / 5e-33 Protein kinase superfamily protein (.1) AT5G18910 132 / 1e-32 Protein kinase superfamily protein (.1) AT2G18890 129 / 3e-32 Protein kinase superfamily protein (.1.2) AT4G02010 130 / 2e-31 Protein kinase superfamily protein (.1) AT4G20450 130 / 3e-31 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 129 / 6e-31 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040000 [exp] 281 / 4e-86 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 277 / 2e-84 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 274 / 2e-82 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 270 / 6e-82 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 261 / 5e-78 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 236 / 8e-69 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.015G085400 [exp] 221 / 3e-67 AT2G33580 163 / 4e-46 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 201 / 2e-56 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 198 / 4e-55 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041323 [exp] 602 / 0 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037389 [exp] 591 / 0 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10022488 [exp] 270 / 2e-81 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 255 / 5e-76 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 255 / 6e-76 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 218 / 4e-62 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022345 [exp] 181 / 8e-49 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10016793 [exp] 179 / 4e-48 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 175 / 9e-46 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021889 [exp] 170 / 1e-45 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G010300.1 pacid=42771945 polypeptide=Potri.009G010300.1.p locus=Potri.009G010300 ID=Potri.009G010300.1.v4.1 annot-version=v4.1 ATGTATCGTATCTGGTTTGCTGCAGAAACCATGGTCTTCATTTGGTTTCTGATCTTCCTGTTCTTCAATCCAATCAATGCTCAACAATACTATGACCCGT CGGATTGTTCAGAAAATACAAGCTATCCAGGTTCAAGATACACTTGCAATCATTCCTATCAGCATCCATGCCAAACATTTTTAGTCTACAGAGCCAGCCA CTATTTCAAGACTATCTCAGATGTCTCTCAGTTGTTTCAGCTAGATCCTGCTGAGCTACTTCACTTAAACAATCTTAAATCTCAGCTGAAAGTTCTCGAA CCAGGTCGAGAAGTTCTTGTTCCGATCAAATGTTCTTGCCTTGGCCAGTTCTTCCAGGCAACTTTCAACTACACAGTTCCAGAAAACAGTACAGTTGAAC TCTCGGATATTGCTTGCAGAATTTTCGAAGGTTTAGCAAAACCAGGCACCCTTGTCGAGGAAAACGCATCTGAAGGAAATAATGTTGAGGTTGGTACTAA GCTTCATGTGCCCTTGAAATGTGCGTGTCCGGATAATTCTAGTAACAGCAGTGGAGTCAAGTACCTTGTGACCTACCCTTTGGTAGAAGGCGATGAACCA AGCATACTAAGTGAAAAATTTAGCATCACTCCCGTAGATTTATGGGTCGCTAATAATTTTCAACCTTGGCCAACTATATATCCAAACACAACTGTCTTAA TTCCCTTGAAAACAGACCCTGTCATTAATTTCAGTATCCCACGCTCTCCACCTCCAAGTCCTGGTTTTCTTCCCACAATTTTAGTTCAGAAAACCACCAA CACAAAGTTACGGAATCTGTACATTGCAGGATCAGTTGTTGGCTTTATTCTGCTACTAGCTGCATTGATTGTATGTGGGTTGCATGTGAAGGCCTTGCGC AAATTTAAGGTTGTGAAGTTACAGTCCTTCAATACTAGAAGCTCTCAACTTTCATGCCCAACACCAAGTTCTCCTAGATCAGGACAATTAACAGGTCGAA GCTCAGCAACTTCTTGTTTATCTCCTGATCTTCTGGCTGGCATTAAGTATTCCTTGAGAAACTATAGCATTGAGGACCTCAAGAGAGCGACAGATGATTT CAGTGAAGAAAGGAAGATTGGGGATCAAGCCTACAAGGGGTTGAATATGGATAATGCGGAAATGATGATCAAGCTGATGAGATTTGAACAGACCCGCCAA GTTATCGATATACATTCGAAAATCAACCACATAAATATTCTGAATTTGCTTGGTGTTTGTTATGGAGAGAATGACTATTCTTGGTCCTACCTCGTGTTCG AGCTACCTAGCAATGGCTGCTTGAGGGACTTGTTATCTAATTCATCGAATCCTCTTCGATGGGATAAACGAACTCAGATAGCTTTTGACATTGCTACAGC TCTTCACTATCTACATTATTGCATTTTTCCAACTTATGCTCACTTGAGTGTCAACAGTAGAAATATTTTTGTAACAACAGATTGGAGAGCAAAGCTTACA AATATCAGAACCAACCCTGCTGTTGGATCTTCCAGAGGAAATGAAAACATAGAGAGTGTCAAAGGATGTGTTGCACCGGAATACGTTGTCGATGGCTCGG TTTCTGAGAAAGTAGATATTTTTGCGTTTGGAGTTGTTCTACTTGAGCTCATCTCAGGAAAAGATGATGTTGATGGAAAATCATTCAAAGAATGTATTGC TTTTTTGGGCGGGAAAACTACTGAAGGTGGCTGTTTCGATGGATTGAGGAGTTTCATGGATCCATGTCTGAAGGAGGATTATCCTCTTGCCGAGGCCTTA TGTGTAACTGTTTTGGCAAAGGCATGTGTTGAAGAAGACCCTTTACATAGGCCATCTATGGATGATATCTTGAAAGTTCTTGTCAGAATGGTACGATGA
AA sequence Show only first row Show all	>Potri.009G010300.1 pacid=42771945 polypeptide=Potri.009G010300.1.p locus=Potri.009G010300 ID=Potri.009G010300.1.v4.1 annot-version=v4.1 MYRIWFAAETMVFIWFLIFLFFNPINAQQYYDPSDCSENTSYPGSRYTCNHSYQHPCQTFLVYRASHYFKTISDVSQLFQLDPAELLHLNNLKSQLKVLE PGREVLVPIKCSCLGQFFQATFNYTVPENSTVELSDIACRIFEGLAKPGTLVEENASEGNNVEVGTKLHVPLKCACPDNSSNSSGVKYLVTYPLVEGDEP SILSEKFSITPVDLWVANNFQPWPTIYPNTTVLIPLKTDPVINFSIPRSPPPSPGFLPTILVQKTTNTKLRNLYIAGSVVGFILLLAALIVCGLHVKALR KFKVVKLQSFNTRSSQLSCPTPSSPRSGQLTGRSSATSCLSPDLLAGIKYSLRNYSIEDLKRATDDFSEERKIGDQAYKGLNMDNAEMMIKLMRFEQTRQ VIDIHSKINHINILNLLGVCYGENDYSWSYLVFELPSNGCLRDLLSNSSNPLRWDKRTQIAFDIATALHYLHYCIFPTYAHLSVNSRNIFVTTDWRAKLT NIRTNPAVGSSRGNENIESVKGCVAPEYVVDGSVSEKVDIFAFGVVLLELISGKDDVDGKSFKECIAFLGGKTTEGGCFDGLRSFMDPCLKEDYPLAEAL CVTVLAKACVEEDPLHRPSMDDILKVLVRMVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	2.44	0.9818
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	3.00	0.9777
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	3.16	0.9870
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	3.74	0.9747
AT1G77160			Protein of unknown function (D...		Potri.005G188100 [exp]	4.35	0.9724
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	5.29	0.9840
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	5.91	0.9824
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	7.00	0.9816
AT2G03430			Ankyrin repeat family protein ...		Potri.013G062000 [exp]	7.00	0.9510
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	7.41	0.9753

Compare expression of checked genes

Potri.009G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.