Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 763 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 679 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 658 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 565 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 224 / 3e-63 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 179 / 2e-47 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 154 / 7e-39 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 71 / 1e-12 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT2G01150 44 / 4e-05 RHA2B RING-H2 finger protein 2B (.1) AT1G19110 45 / 0.0002 inter-alpha-trypsin inhibitor heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223766 [exp] 858 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 849 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 468 / 3e-156 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 461 / 2e-153 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 200 / 2e-54 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 167 / 3e-44 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 159 / 1e-41 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.001G166800 [exp] 55 / 2e-07 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 54 / 2e-07 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016102 [exp] 780 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 768 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 763 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 740 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 707 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 214 / 8e-64 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 167 / 2e-43 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 154 / 5e-43 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 143 / 9e-38 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 130 / 3e-31 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF00092 [poplar] [flax] VWA von Willebrand factor type A domain CL0128 [poplar] [flax] PF14624 [poplar] [flax] Vwaint VWA / Hh protein intein-like CL0229 [poplar] [flax] RING PF17123 [poplar] [flax] zf-RING_11 RING-like zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G010350.1 pacid=42772626 polypeptide=Potri.009G010350.1.p locus=Potri.009G010350 ID=Potri.009G010350.1.v4.1 annot-version=v4.1 ATGGGAAGCAAATGGAGAAAGGCAAAATTAGCTCTTGGCCTGAACATGTGTCTTTATGTCCCTCCGACTGATGTTGAACAACGTGATTCTTCCTCCTCAC CTTCTCCTGCTAGACTATTCTCCCGCTCCTCTCACGGGTCCACTACTCCTACCCCTTCTTCTTCCGGCCTCCGCTTGTCCACATCCCCCGATAGCAACAA TAAGAGGACCTGTGCAATATGCCTGACTGCCATGAAAACGGGACAGGGCCAAGCCATTTTTATGGCAGAATGCTCCCACTCCTTCCACTTCCATTGCATT GCCTCTAATGTAAAGCATGGGAACCAGATTTGTCCAGTTTGCCGAGCAAAGTGGAAAGAAATCCCCTTTCAAAGATCTGTTTCTGATGTTACTTGTGGAA AGCCAAGAATGAGCGCACTAGGTTGGCCCCAAGATGATGCTTGGATGACTGTTCTAAGACGGCTTCCTCCAGCTCGAACAGATGCAAACAGGCATATTTC ATCACATTATCAAGCCAATGAACCAGCTATCTTTGATGATGATGAAGACTTGGATCCGCAACACGAGACTGCCGAGGGAAACACATCCACTCAAGATGCT GGTGATGTTAATTCTGTGAGAACTGTAGAGGTTTTCACATATACAGAAGTTTCAGCAGTTCCAAAATCAGTCTCTTATGATAATTTCACCATACTAATCC ATCTCAAGGCCCCTCTTACAAGTGGAAGACAGAATAGGAACTGGAATCATGCTGAATCACCACAATCATCTCAAGATTCTCGTGCTCCGGTTGATCTCGT TACCGTGCTTGATGTTAGTGGCAGCATGTCTGGTACAAAGCTTGCTTTGCTAAAACGAGCTATGGGGTTTGTGATCCAGAATCTGGGTCCATCTGACCGA CTGTCTGTTATTGCCTTCTCATCCACAGCCCGACGCCACTTTCCTCTTCGTCGCATGACAGAGACCGGAAAGCTCGAGGCCTTACAGGCTGTTAATTCTC TGGTTTCTAGTGGTGGGACAAACATTGCTGAAGGTCTAAGGAAAGGTTTCAAGGTGGTGGTTGATCGCAAATGGAAGAATCCAGTTTGTAGCATCATACT ATTATCTGATGGGCAGGATACATATACTATCTCTGGCACAAGCATGACCCGTCCTCAAGCAGATTACAAATCTCTTCTCCCGACATCAATTCACCGGAAT GGTAGCTCGGGGTTCCGTATTCCTGTGCATGCATTTGGGTTTGGTTCAGACCATGATGCTGCATCAATGCATTCAATTTCTGAGATTTCAGGTGGCACAT TTTCATTCATAGAAGCTGAGGGTGTAATTCAGGATGCATTTGCACAGTGCATAGGAGGGCTATTGAGTGTGGTGGTGCAAGAGCTACAGGTCAAAGTTGA GTCTCTTCATCCAAGATTGGAAATTGGTTCAATTCAAGCAGGTAGTTACAAAAGCAGCATCATGGCCAATGCAATTATGGGCTTTGTTGATGTTGGAGAC TTGTACGCCGAAGAAGAAAGGGATTTCTTGGTAACAGTCAATATTCCAGTTGATGGTACCAGTGATGAGATGTCATTGCTAAAGGTCAGTTGTACTTACA GAGATCCTATGACAAAAGGTATGATGACTCTTGAGGAAGCTAGCCAAGTAAAGATCCAAAGGCCCGAAATAACCGGAACACGAGTGGTGTCAATGGAAGT AGAGAAGCAACGAAACAGACTCCGTGCAGCGGAGGCAATGGCTGAGGCTAGAGCTGCAGCTGAAAATGGTGATCTAGCTCGTGCGGTCTCTGTCCTGGAG AGCTGTGGCAAAGCATTGTCAGAAACTGCATCTACTCGGGCAGGTGACAGACTGTGTATTGCACTGTGCGCGGAGTTGAAGGAGATGCAAGAACGGATGG CAAGCCGGCGGGTATATGAAACATCTGGAAGGGCTTACATTCTATCAGGTTTGAGCTCACACTCATGGCAAAGAGCAACTGCGCGAGGTGATTCCACTGA CAGTACAAACCTCATGCAAGCTTACCAGACGCCATCAATGGCGGACATGGTAACCCAGTCTCAGACCATGGTATTCGGTACCCCATCTTCTCAACGTAAA CTTAGGCAAACTATGTCATTTCCAGCTGCCAGACCACGGCCAAGGTAG
AA sequence Show only first row Show all	>Potri.009G010350.1 pacid=42772626 polypeptide=Potri.009G010350.1.p locus=Potri.009G010350 ID=Potri.009G010350.1.v4.1 annot-version=v4.1 MGSKWRKAKLALGLNMCLYVPPTDVEQRDSSSSPSPARLFSRSSHGSTTPTPSSSGLRLSTSPDSNNKRTCAICLTAMKTGQGQAIFMAECSHSFHFHCI ASNVKHGNQICPVCRAKWKEIPFQRSVSDVTCGKPRMSALGWPQDDAWMTVLRRLPPARTDANRHISSHYQANEPAIFDDDEDLDPQHETAEGNTSTQDA GDVNSVRTVEVFTYTEVSAVPKSVSYDNFTILIHLKAPLTSGRQNRNWNHAESPQSSQDSRAPVDLVTVLDVSGSMSGTKLALLKRAMGFVIQNLGPSDR LSVIAFSSTARRHFPLRRMTETGKLEALQAVNSLVSSGGTNIAEGLRKGFKVVVDRKWKNPVCSIILLSDGQDTYTISGTSMTRPQADYKSLLPTSIHRN GSSGFRIPVHAFGFGSDHDAASMHSISEISGGTFSFIEAEGVIQDAFAQCIGGLLSVVVQELQVKVESLHPRLEIGSIQAGSYKSSIMANAIMGFVDVGD LYAEEERDFLVTVNIPVDGTSDEMSLLKVSCTYRDPMTKGMMTLEEASQVKIQRPEITGTRVVSMEVEKQRNRLRAAEAMAEARAAAENGDLARAVSVLE SCGKALSETASTRAGDRLCIALCAELKEMQERMASRRVYETSGRAYILSGLSSHSWQRATARGDSTDSTNLMQAYQTPSMADMVTQSQTMVFGTPSSQRK LRQTMSFPAARPRPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	0	1
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Potri.014G022900 [exp]	5.47	0.9115
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	8.30	0.9276
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G121100 [exp]	9.16	0.9024
					Potri.001G131600 [exp]	14.35	0.9270
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	14.83	0.8808
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G118401 [exp]	19.89	0.8888
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.013G025800 [exp]	20.97	0.8949
AT5G52430			hydroxyproline-rich glycoprote...		Potri.003G129400 [exp]	22.44	0.9080
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059800 [exp]	26.45	0.9063
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134425 [exp]	26.45	0.9131

Compare expression of checked genes

Potri.009G010350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.