Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28250 598 / 0 NCRK Protein kinase superfamily protein (.1.2) AT1G68690 257 / 4e-76 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G58690 247 / 2e-75 Protein kinase superfamily protein (.1) AT4G02010 254 / 4e-75 Protein kinase superfamily protein (.1) AT5G38560 253 / 8e-75 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 248 / 8e-73 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G26150 247 / 3e-72 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 243 / 2e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G23540 242 / 2e-70 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24540 236 / 5e-70 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212600 [exp] 1067 / 0 AT2G28250 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G111600 [exp] 266 / 3e-79 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 258 / 2e-76 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 257 / 3e-76 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 256 / 2e-75 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.001G204000 [exp] 244 / 6e-75 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 253 / 1e-74 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 252 / 3e-74 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 243 / 3e-74 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021460 [exp] 757 / 0 AT2G28250 590 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016098 [exp] 730 / 0 AT2G28250 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026335 [exp] 245 / 3e-74 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10034082 [exp] 252 / 5e-74 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10006985 [exp] 241 / 1e-73 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10042327 [exp] 248 / 2e-73 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10001323 [exp] 241 / 2e-73 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10011490 [exp] 239 / 3e-73 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10003066 [exp] 249 / 6e-73 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10029151 [exp] 238 / 7e-72 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G010400.3 pacid=42771965 polypeptide=Potri.009G010400.3.p locus=Potri.009G010400 ID=Potri.009G010400.3.v4.1 annot-version=v4.1 ATGAAGCTTCAGCTGAAAGTTGCTCTTGCTTTTCTCATTAGCTTAATCTGGATCCAGCAAGGTTTTTCTGATGAACTTTCAGCTAAATCAGGCATCAACA AATGGACATGTACATGTTCAGCATCATATCAAGGAAATCAGAGCTATATTAAATCTAATTGTTCTACATCCTGTGATTGCAGTCCGGATGGTGGACAAAG TGGAGGTATGTGGACATGTACATGTTCTTCCGATGGGTTACCAAAAGTTGCAACTGGCATTCAAGATACTACCTGTTTTACAGCCTGCAACTGCACTTCT GGTTCTCTTACTGATGTTCAAGATACAAGAAAACATTTTTCCAGCAAGATAGTTTTGGTCATCCTACTATTATGTGTCATACTCACAACTCTTGCATTTC TTGCTTCAATAACATGCTATCTCTACCGAAAGGACAAGTGCCTTGTCCAGTCACCAGTATTCTTGTCAGACAGGGAAAGGAGTTGCAATAGTGCTACTAA CTTAATTAGTCACAGAGCATCTTCAGTGTCAGAAACTAAAATCAGGGTTGATTCCCCCATTAATCCTATATCAGGGTGTTTTCGCAAGGCTTCTTTCTTG TGTAGGAGCAAAACAGAGATTATACAAGGAAATTTAATCCTTTTCACGTACTCTGAGCTGGAACATGCAACCAATAAGTTCTCCCATTCTAATCTAATTG GACTTGGAGGAAGTAGTTATGTATATCATGGTCAGCTCAAGGATGGTAGGACTGTGGCAGTTAAGCGGCTGAAAGCTCAAGGTGGTCCTGATGCAGACTT CCTTTTTTCAACAGAGGTTGAGCTGTTAGCGAAGCTCCATCACTGTCATGTTGTGCCTTTGCTTGGCTACTGCTCGAAGTTCCAAGGGAAATTTTCTGAG AGGTTGCTGGTATTTGAATACATGCCTAATGGTAACCTGAGGGACTGTCTGGATGGGGTTTTAGGGGAAAAAATGAACTGGCAAACTCGTGTTACTATTG CAATAGGAGCTGCAAGGGGTTTAGAATATCTTCATGAATCAGCTGCTCCAAGAATTTTGCACAGAGATGTCAAATCAACCAATATTCTTATGGATGAAAA CTGGAGGGCAAAAATTACTGATCTTGGTATGGCTAAACGTTTAAGAGGTGATGGAGTTCCCAGCAGTCCCAGTTCTCCTGCAAGAATGCAGGGCACATTT GGCTATTTCGCACCAGAGTATGCAATGATTGGAAGAGCCTCTCCTATGTCAGATGTTTTCAGTTTTGGGGTAGTTCTTCTTGAACTTATCACTGGTCGGC AACCAATCCATAAATCAACCAACAAAGGAGAAGAAAGCCTTGTCTTATGGGCTACTCCTCTTCTCCAGGATAGTGGGCTAGTATTACTAGAGTTGCCTGA TCCACGCTTGAAAGGGAATTTCCCAGAAGAAGAGTTGCAAATAATGGCTTACCTGGCAAAGGAGTGCCTGCTGTTGGATCCTGATGCTCGACCAAGCATG GGTGAGGTGGTACAAATCCTCTCAACTATAGCACCAGAAAAATCCAAAAGGAGAAACATTCCTGTGAATCTTTTTCAGATGTCTTCAATCCAGAGAATGA AAACTGAGCTATTCAAAGAAAAACCCGACAGTCGAGCTGAAGGTCCTGTTGATGCAGAGGAGGTACTGAAGCCAGACAGGTCAATTCAACAGTCAGCTTT AGATGTAGAACACGACCATTTTGTTGGAAGCAACAATGTAGGGGCAGATAATAATTCAATCAAGTATATGGAGAGGTTAATCCTTTTGACTTCAAAAGCT CAAAGTTTGCGTTCCTCGGATGATGAGGCTGTGGACTTAACTGAGCCTCGGCTAGAATCATTCTGCATGGCTAATGTTAAATCTCCATGA
AA sequence Show only first row Show all	>Potri.009G010400.3 pacid=42771965 polypeptide=Potri.009G010400.3.p locus=Potri.009G010400 ID=Potri.009G010400.3.v4.1 annot-version=v4.1 MKLQLKVALAFLISLIWIQQGFSDELSAKSGINKWTCTCSASYQGNQSYIKSNCSTSCDCSPDGGQSGGMWTCTCSSDGLPKVATGIQDTTCFTACNCTS GSLTDVQDTRKHFSSKIVLVILLLCVILTTLAFLASITCYLYRKDKCLVQSPVFLSDRERSCNSATNLISHRASSVSETKIRVDSPINPISGCFRKASFL CRSKTEIIQGNLILFTYSELEHATNKFSHSNLIGLGGSSYVYHGQLKDGRTVAVKRLKAQGGPDADFLFSTEVELLAKLHHCHVVPLLGYCSKFQGKFSE RLLVFEYMPNGNLRDCLDGVLGEKMNWQTRVTIAIGAARGLEYLHESAAPRILHRDVKSTNILMDENWRAKITDLGMAKRLRGDGVPSSPSSPARMQGTF GYFAPEYAMIGRASPMSDVFSFGVVLLELITGRQPIHKSTNKGEESLVLWATPLLQDSGLVLLELPDPRLKGNFPEEELQIMAYLAKECLLLDPDARPSM GEVVQILSTIAPEKSKRRNIPVNLFQMSSIQRMKTELFKEKPDSRAEGPVDAEEVLKPDRSIQQSALDVEHDHFVGSNNVGADNNSIKYMERLILLTSKA QSLRSSDDEAVDLTEPRLESFCMANVKSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.009G010400 [exp]	0	1
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	1.73	0.9248
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	2.82	0.9137
AT1G31780			unknown protein		Potri.004G236600 [exp]	6.32	0.9071
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	6.92	0.9047
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	9.59	0.8985
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	10.72	0.9103
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	12.84	0.9047
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	14.00	0.9079
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	16.43	0.9061
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	19.36	0.9123

Compare expression of checked genes

Potri.009G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.