Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) AT3G61620 105 / 2e-27 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT3G46210 74 / 2e-15 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT3G07750 47 / 3e-06 3'-5'-exoribonuclease family protein (.1.2) AT5G14580 47 / 8e-06 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212500 [exp] 442 / 2e-159 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.014G094300 [exp] 108 / 2e-28 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 69 / 1e-13 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.001G347900 [exp] 51 / 5e-07 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G166200 [exp] 47 / 4e-06 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037395 [exp] 419 / 3e-150 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 404 / 2e-144 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10005148 [exp] 95 / 7e-23 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 92 / 7e-22 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10009221 [exp] 69 / 1e-13 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10000255 [exp] 63 / 4e-12 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10037991 [exp] 62 / 5e-11 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10022250 [exp] 49 / 2e-06 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 49 / 2e-06 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001173 [exp] 47 / 4e-06 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Potri.009G010600.1 pacid=42771404 polypeptide=Potri.009G010600.1.p locus=Potri.009G010600 ID=Potri.009G010600.1.v4.1 annot-version=v4.1 ATGGCTTCCACAGGTGGTGCTGCCCCAGGCACTTACACTCCCACTCCCACCAAGAAAACCCAACGTTCTTCATTCTTCTCTGACTCTGATGTCGACTGGC TTCGTCCCGATGGTCGTGGTTTCCACCAGTGCCGACCTGCTTTTTTCAGGACTGGTGCGGTGAATTCTGCTGCAGGATCTGCATATGCTGAATTTGGAAA TACAAAGGTCATCGTTTCTGTGTTTGGGCCTAGAGAAAGTAAGAAAGCAATGGTGTACAGTGATGTGGGCAGGCTTAATTGCAATGTTAGCTGTACCACT TTTGCCACCCCTGCTCGTGGACTGGGATCAGATAATAAAGAGTTCTCTTCCATGCTTCATAAGGCTTTGGAAGGCGCAATCATGTTGGAAACTTTTCCCA AGACAACTGTAGATGTGTTTGCATTGGTGTTAGAATCTGGCGGCAGTGATCTTCCTGTTGTAATATCTTGTGCAAGCCTTGCCTTGGCGGATGCAGGGAT TATGATGTATGACCTTGTTGCTGGAGTTTCTGTGTCTTGTCTTGGTAGAAACCTCATCATTGATCCAATTTTGGAAGAGGAAAGTTTTCAAGATGGAAGC CTGATGATCACTTGCATGCCTTCTCGTTATGAGGTCACGCAGCTTTCTATTACAGGGGAATGGTCAACTGCAAAACTGAATGAGGCAATGCAGCTTTGCT TGGATGCTTGCTCAAAGCTGGACAAGATAATGAGGGCATGTTTGAAAGAGGCTGCTTCAGCTTCACTGGATTAG
AA sequence Show only first row Show all	>Potri.009G010600.1 pacid=42771404 polypeptide=Potri.009G010600.1.p locus=Potri.009G010600 ID=Potri.009G010600.1.v4.1 annot-version=v4.1 MASTGGAAPGTYTPTPTKKTQRSSFFSDSDVDWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTT FATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGS LMITCMPSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLKEAASASLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27490			3'-5'-exoribonuclease family p...		Potri.009G010600 [exp]	0	1
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.006G136300 [exp]	8.00	0.7070
AT5G53045			unknown protein		Potri.015G011500 [exp]	11.83	0.7100
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.019G087100 [exp]	12.36	0.7705
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.016G093500 [exp]	13.19	0.6865
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	19.89	0.7454
AT4G18100			Ribosomal protein L32e (.1)		Potri.014G191000 [exp]	22.31	0.7502
AT2G37500			arginine biosynthesis protein ...		Potri.012G115900 [exp]	25.45	0.6736
AT2G19740			Ribosomal protein L31e family ...		Potri.009G064100 [exp]	29.89	0.7479
AT5G59460			scarecrow-like transcription f...		Potri.009G033400 [exp]	30.33	0.5899
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.006G252000 [exp]	33.91	0.6943

Compare expression of checked genes

Potri.009G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.