Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CNGC15.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28260 1053 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30360 758 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 757 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G53130 726 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT5G14870 723 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT4G30560 715 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 713 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 712 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT1G19780 711 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT3G48010 708 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 795 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 741 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.015G019100 [exp] 734 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 729 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.017G067000 [exp] 729 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.012G002200 [exp] 724 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.013G108200 [exp] 697 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.001G043900 [exp] 695 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 695 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021461 [exp] 1060 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 1019 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041319 [exp] 811 / 0 AT2G28260 800 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 791 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 783 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 783 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019014 [exp] 736 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10042434 [exp] 729 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 718 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10016097 [exp] 712 / 0 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.009G010700.6 pacid=42771549 polypeptide=Potri.009G010700.6.p locus=Potri.009G010700 ID=Potri.009G010700.6.v4.1 annot-version=v4.1 ATGGGTTTTGGGAATTCAAAATCTGTAAGGTTTAGAGATGATCTGGAATTAAGCTTACCGCCGGCAGTGAATGGAGATGGTGCAATTAAACGTAAATACA ACATTGATGGAACACAAATGTCAGACTCTAGTAGGAAGATGATGTCTCAGATGGAGGTGTCTGGGAAGACTGGAAAATCATTTAAAGCTAAAATACTGTC TAGAGTTTTCTCTGAGGATTATGATAGAGTGAAGAAAAAGATATTGGATCCTCGAGGAGCATCGATACGGAGATGGACTAAGATCTTTTTAGTAGCATGC TTAGTTTCCTTGTTTGTTGATCCACTTTTCTTTTACTTGCCTGAAGTCTGGAAGGAATTATGTATTGATATTGGCATACCCCTTGAAGTAGGCCTGACAA TTGTTAGATCAATATCTGATGTCTTTTACATGATTCAGATTTTAATTCGTTTTCGTACTGCTTATGTCGCGCCTTCTTCTCGTGTTTTTGGGAGAGGAGA ACTTGTTATAGATTCTAAAAAGATTGCGTTAAGGTACCTACAGAAGAATTTCTGGATCGACCTTATTGCAGCCTTGCCTCTTCCTCAGGTGTTAATTTGG ATTGTTATCCCCAATCTTAGTGGTTCAACGATGAGAAACACAAAAAATGTCCTTCGTTTCATCATCATTTTTCAGTATCTCCCACGACTTTTTCTGATAT TTCCACTCTCATCGCATATTGTCAAGACCACTGGTGTTGTAACAGAAACAGCATGGGCAGGAGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCA TGTTTTAGGAGCTTGCTGGTATCTTCTATCGATTGAGCGACAGGAAGCATGCTGGAGAAGTGTCTGTAATCTAGAGAAGTTATCTTGTGAGTATGGATTC TTTGATTGTCGTCGGGTGCATGACAGTCCTCATAGGGAATCTTGGTTCAAATCAAGCAACATCACAAACTTTTGCAACCCAGATAATAATTACTATCAGT TTGGAATATATGGTGATGCTTTGAAATTTGATGTTACGACTGCATCATTCTTCAACAAATACTTTTACTGTTTTTGGTGGGGCTTAAGGAACCTCAGCTC ACTGGGGCAAAATCTTTCAACAAGCACTTATGTGGGTGAAATAGCATATTCCATCATCATTGCAACGCTTGGACTGGTTCTCTTCGGATTGCTTATAGGG AATATGCAAACATACCTACAATCAACAACAGTTCACTTGGAAGAGTGGAGAATCAAGAGAACTGATACGGAACAATGGATGCATCACAGGCAGCTACCGC ATGAGTTGAAGCAGTCTGTTCGGAAATACGATCAGTATAAGTGGGTGGCCACTAGGGGCGTTGATGAGGAAGCTGTTCTCAAAGGCCTGCCCATGGAACT GCGAAGAGACATCAAACGCCATCTCTGCCTTGATTTGGTTCGGAGAGTTCCGCTATTTGATCAAATGGATGAAAGGATGCTAGATGCAATATGCGAGAGG CTTCAACCAGCGTTGTGCACTGAAGGCACGTTTCTTGTGCGTGAAGGTGATCCTGTCAATGAGATGCTGTTCATAATTCGCGGCAACCTTGATTCCTACA CAACTAATGGTGGCCGAACTGGATTTTTCAATTCCTGCCGCCTTGGTCCAGGTGACTTTTGTGGTGAGGAACTATTGACATGGGCATTAGACCCACGCCC AAGTATCATCCTCCCATCATCTACACGCACAGTTAAAGCTATTTTGGAAGTAGAGGCATTTGCCCTCAGTGCAGAAGACTTGAAGTTTGTAGCATCGCAG TTTAGAAGACTTCACAGCAAGCAACTAAGACAAAAGTTCCGGTTCTACTCACACCATTGGAGAACATGGGCTGCCTGTTTCATACAAGCAGCATGGCGCC GGTATAAGAAACGGAAGGAGGCGACTGACCTCAGAGCTAGAGAAAATCCAACAGCTGCCGATCCTGCATTAACATCACCAGGGTCTGGCTTATCCATGTA TGCAGCAAGGCTGAAAGCAAGCGCTAGAAGGGGTGTCCTTAAGCGTTCCGGCTCAGATTCAAGTGTTGTGAGCTCACTGCAGAAGCCGGACGAACCAGAT TTTTCAGTAGATGAGGAATGA
AA sequence Show only first row Show all	>Potri.009G010700.6 pacid=42771549 polypeptide=Potri.009G010700.6.p locus=Potri.009G010700 ID=Potri.009G010700.6.v4.1 annot-version=v4.1 MGFGNSKSVRFRDDLELSLPPAVNGDGAIKRKYNIDGTQMSDSSRKMMSQMEVSGKTGKSFKAKILSRVFSEDYDRVKKKILDPRGASIRRWTKIFLVAC LVSLFVDPLFFYLPEVWKELCIDIGIPLEVGLTIVRSISDVFYMIQILIRFRTAYVAPSSRVFGRGELVIDSKKIALRYLQKNFWIDLIAALPLPQVLIW IVIPNLSGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSSHIVKTTGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWRSVCNLEKLSCEYGF FDCRRVHDSPHRESWFKSSNITNFCNPDNNYYQFGIYGDALKFDVTTASFFNKYFYCFWWGLRNLSSLGQNLSTSTYVGEIAYSIIIATLGLVLFGLLIG NMQTYLQSTTVHLEEWRIKRTDTEQWMHHRQLPHELKQSVRKYDQYKWVATRGVDEEAVLKGLPMELRRDIKRHLCLDLVRRVPLFDQMDERMLDAICER LQPALCTEGTFLVREGDPVNEMLFIIRGNLDSYTTNGGRTGFFNSCRLGPGDFCGEELLTWALDPRPSIILPSSTRTVKAILEVEAFALSAEDLKFVASQ FRRLHSKQLRQKFRFYSHHWRTWAACFIQAAWRRYKKRKEATDLRARENPTAADPALTSPGSGLSMYAARLKASARRGVLKRSGSDSSVVSSLQKPDEPD FSVDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	0	1	CNGC15.1
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	2.82	0.9480
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G013100 [exp]	3.46	0.9376
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	6.24	0.9479
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	10.19	0.9336
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	10.81	0.9319
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	10.90	0.9343
					Potri.004G140000 [exp]	13.67	0.9264
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	13.78	0.9312
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	16.24	0.9295
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	16.91	0.9283

Compare expression of checked genes

Potri.009G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.