Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28310 608 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G08040 595 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 533 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 514 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 508 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G13000 506 / 2e-180 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G24570 473 / 1e-167 Protein of unknown function (DUF707) (.1) AT4G12840 286 / 4e-94 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 258 / 3e-83 Protein of unknown function (DUF707) (.1) AT1G61240 245 / 2e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185600 [exp] 558 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 555 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 540 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.019G053000 [exp] 266 / 2e-86 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 258 / 4e-83 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 253 / 7e-81 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.003G003100 [exp] 249 / 1e-79 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.004G227700 [exp] 248 / 3e-79 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.004G036800 [exp] 247 / 9e-79 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021463 [exp] 599 / 0 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10016095 [exp] 598 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 592 / 0 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10041316 [exp] 587 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10011414 [exp] 550 / 0 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 526 / 0 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 499 / 1e-177 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 495 / 3e-176 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10022287 [exp] 477 / 3e-168 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10035229 [exp] 432 / 4e-152 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [poplar] [flax] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Potri.009G011000.9 pacid=42772819 polypeptide=Potri.009G011000.9.p locus=Potri.009G011000 ID=Potri.009G011000.9.v4.1 annot-version=v4.1 ATGGGGACTATACATCGCAGTTTCTCCTGCAGTGGAGTTTATAGGAAAACAAATGATAGTGCCAGGCTCATTATCGTGACAATTGTCGGAGTTGCTTTTG GATTTTTTGTTGGTATATCATTTCCAGCAGTGACATTTACAAAGAATGAATTTAGAAGAAGCAAATCACTTGAAACTCTTGGATCAGGCAGCAATGTCAC TAATATTTATGTTCCAACAAATCCTCGTGGTGCGGAGTTATTGCCTCCAGGAATTGTTGTGGCCGAATCTGACTTTTACTTGCGAAGATTATGGGGTGAA CCTAGTGAGGATATGTTGAAGAAGCCAAAGTATTTATTAACATTTACAGTCGGTTATGATCAGAGGAACAACATTAACGCAGCAGTTAAAAAGTTTTCTG ATGATTTCCAAATTTTGCTTTTCCACTATGATGGCCGGACAAGCGAGTGGGACCAGTTTGAGTGGTCAAAAAGTGCAATCCATGTTAGCATAATGAGACA AACAAAATGGTGGTATGCAAAAAGGTTTTTGCATCCTGATATTGTTGGAGCTTATGAATATATTTTTATATGGGATGAAGATCTTGGAGTAGAACATTTT AATGGAGAGAAGTATATACAGTTGATCAAGAAACATGGTCTGGAGATCTCTCAACCAGGTCTTGAGCCTAATAATGGACTTACATGGCAGATGACGAAGA GGAGAGGAGACAGAGAGGTTCACAAGGATACAGAGGAGAAACCAGGCTGGTGTAGTGACCCACATTTGCCTCCATGTGCTGCCTTTGTGGAAATCATGGC ACCTGTATTCTCTCGTGAGGCTTGGCGTTGTGTGTGGCATATGATTCAGAATGATTTGGTGCATGGATGGGGATTGGATTTTGCTCTCAGAAGATGTGTA GAGCCTGCACATGAAAAAATTGGAGTGGTTGATTCACAGTGGATTATTCATCAAGTGATTCCTTCTCTTGGAAGCCAGGGGAAGTCAGAGAAGGGGAAAG CTCCATGGGAAGGGGTGAGAGCAAGATGCAGAAACGAGTGGTCTTTATTCCGGAGTCGTCTTGCAGATGCTGAACAGGCATACATCTCTCAGACTAAGAA GGGGTGA
AA sequence Show only first row Show all	>Potri.009G011000.9 pacid=42772819 polypeptide=Potri.009G011000.9.p locus=Potri.009G011000 ID=Potri.009G011000.9.v4.1 annot-version=v4.1 MGTIHRSFSCSGVYRKTNDSARLIIVTIVGVAFGFFVGISFPAVTFTKNEFRRSKSLETLGSGSNVTNIYVPTNPRGAELLPPGIVVAESDFYLRRLWGE PSEDMLKKPKYLLTFTVGYDQRNNINAAVKKFSDDFQILLFHYDGRTSEWDQFEWSKSAIHVSIMRQTKWWYAKRFLHPDIVGAYEYIFIWDEDLGVEHF NGEKYIQLIKKHGLEISQPGLEPNNGLTWQMTKRRGDREVHKDTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCV EPAHEKIGVVDSQWIIHQVIPSLGSQGKSEKGKAPWEGVRARCRNEWSLFRSRLADAEQAYISQTKKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	1.00	0.9675
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	1.41	0.9559
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	2.23	0.9275	ATHB.12
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	3.00	0.9344	Pt-ARPC1.1
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	5.29	0.9144	Pt-CPK7.2,CPK14
AT5G01970			unknown protein		Potri.016G141300 [exp]	6.00	0.9152
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	7.54	0.9091	RAB1.1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	8.48	0.8984
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	8.83	0.9146
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.006G092600 [exp]	9.64	0.9022

Compare expression of checked genes

Potri.009G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.