Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28320 1072 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 925 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G45560 377 / 2e-120 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 373 / 2e-118 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G35180 203 / 3e-55 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 177 / 6e-50 Protein of unknown function (DUF1336) (.1) AT1G06050 176 / 2e-49 Protein of unknown function (DUF1336) (.1) AT5G24990 161 / 3e-44 Protein of unknown function (DUF1336) (.1) AT5G25010 160 / 7e-44 Protein of unknown function (DUF1336) (.1) AT5G25020 127 / 2e-32 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038800 [exp] 946 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 940 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.001G132900 [exp] 375 / 3e-119 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 369 / 4e-117 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 268 / 2e-78 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G213000 [exp] 209 / 2e-57 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 179 / 2e-50 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 164 / 4e-45 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 163 / 9e-45 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021465 [exp] 1120 / 0 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 1046 / 0 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10040406 [exp] 899 / 0 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10023522 [exp] 855 / 0 AT2G28320 883 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 368 / 2e-116 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 361 / 5e-114 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10019591 [exp] 249 / 3e-72 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 219 / 5e-61 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 214 / 6e-59 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 204 / 4e-57 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0209 [poplar] [flax] PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.009G011200.1 pacid=42771567 polypeptide=Potri.009G011200.1.p locus=Potri.009G011200 ID=Potri.009G011200.1.v4.1 annot-version=v4.1 ATGGATGTAATAGTAATATCACAGCAGAAGAAGCATGATGATAATAATGATAATGATAATGATAATAATAACAACAACAATGAAAGAATGGAAGGTTGGT TATATCTTATCCGGTCGAACCGGATCGGATTGCAGTACTCAAGGAAACGCTATTTTGTTCTTCAACATCATCTCCTCCAGAGCTTCAAGTCTGTTCCTCT TTCTAAGAACCAGGATCCTGTGAGAAGCGCAATCATTGATTCTTGCATTCGTGTCACAGACAATGGGAGAGAGAGCATTCATCGGAAAGTATTCTTCATA TTTACTGTCTATAACACTTCTAATCACAATGATCAACTTAAGCTAGGAGCAAGCAGTCCTGAAGAAGCAGCAAGATGGATCCATTCTATTCAGGAGGCAG CTTTAAAGGGTGCTCATAGCATTGTTGGTTGTTCAAGGAGCAGTTGTCAGTCTTTTAGATTGAGCGGTCCCAGTTGGGTAAATCATAATAAACCAATAGA CTGGACTCATTGTTCATCCACCCACACTGATTTAGTGACTGATGTTATTGCACCTTCACCTTGGACAATCTTTGGTTGTCAGAATGGTCTCCGTCTCTTT AAAGAAGCAAAAGATAGGGATTCTCATGGAAAGTGGGACGATCATCCTGCAATCATGGCTGTGGGTGTGGTTGATGGAACCTCAGAAGCCATTTTTCAAA CTCTCATGTCTCTTGGTCCTTCAAGATCCAAATGGGATTTTTGTTTCTACAAGGGAAGTGTTGTTGAGCACCTTGATGGTCACATGGACATTATTCACAA GGAATTATACAATGATTGGTTACCTTGGGGAATGAAACGAAGAGATTTTTTGTTGCGGCGTTACTGGAGAAGGGAAGATGATGGAACATATGTTATTCTC TACCACTCTGTGTATCACAAGAAGTGTCCACCCCAGAAAGGCTATGTTCGTGCTTGCCTTAAAAGTGGAGGATATGTCATATCTCCTGTGAACCATGAGA GACGATCTGTTGTAAAGCACATGCTTGCTGTTGACTGGAAATCCTGGAAATCATATCTTAGGACTTCTTCAGCCCGGTCCATTACCATTCGAATGCTTGA GAGAGTTGCTGCATTACGAGAGTTGTTCAAAGCAAAACTAGGGAATTGTCCTTCTTCTGATTTTTCTTCAGGAGAGTTGGTTGGGAATATGAGGTTGCAT CAGATTGAAGGGGATCAGAGGATTGACGTTCAAACACCAACAAATGATGGGATGACTAAGGAATGCATGAATGAAGAAGTGGATAAGACTCCTTCAGAAC ATGCTAGCCTAGTAGGCCTTAATGATCCTGCTGATGAGTTTTTTGATGTTCCAGAACCATCAGATTATGATCAATTAGAAAATGGTTGGAGTTCAGATTT TGATCCAGAAATGTACTCTCAGGATGCTCGGCAGCCAAAGTTATCCACTGCTGCTGGTTTTGTGAAGAAACTGCATGAACTTGCAGTTCAGAAGAGGGGC TACGTGGACTTGCAAGAGATGGTGAGGGAAGACAGTATTTCATGCTGCTATGGAACCACTCTTCTGAAAGACCCAACTTTTACTCTGCCTTCTAGTTGGG CAACGGCTGATCCTTCTAGCTTTTTAATTCGTGGAAAAAATTACCTTGAAGACCAGAAGAAGTTTAAGGCCAATGGCACTTTGATGCAAATGGTTGCTGC AGATTGGCTAAGATCTGACAAGCGAGAAGATGATCTTGCTGGCCGTCCTGGGAGCATTGTTCAGAAATATGCAGCGCAAGGTGGACCAGAGTTCTTCTTC ATTGTAAATATTCAAGTCCCTGGTTCAACAACATATAGCCTTGCCCTGTACTATATGATGAATACACCTGTGGAAGATGCACCCTTGTTGGAGAGCTTTA TAGAGGGGGACGATGCATATAGAAATTCAAGATTTAAACTCATACCATATATATCTAAGGGTTCCTGGATAGTTAAGCAAAGTGTGGGAAAGAAAGCATG CCTGATTGGCCAAGCTCTTGAAATGAATTATTTCCGTGGGAAGAACTACCTGGAGCTTGGAGTCGATATTGGGTCATCAACAGTTGCAAGGGGCGTGGTC AGTCTTGTTCTTGGCTACCTCAGCAATTTGGTTATCGAAATGGCATTTTTGATACAGGCAAATACAGATGAAGAGCTCCCAGAATATCTTCTCGGAACCT GTCGTCTCAACCATCTGGATGCCTCCAAAGCAGTTCTATTGAAATCATGA
AA sequence Show only first row Show all	>Potri.009G011200.1 pacid=42771567 polypeptide=Potri.009G011200.1.p locus=Potri.009G011200 ID=Potri.009G011200.1.v4.1 annot-version=v4.1 MDVIVISQQKKHDDNNDNDNDNNNNNNERMEGWLYLIRSNRIGLQYSRKRYFVLQHHLLQSFKSVPLSKNQDPVRSAIIDSCIRVTDNGRESIHRKVFFI FTVYNTSNHNDQLKLGASSPEEAARWIHSIQEAALKGAHSIVGCSRSSCQSFRLSGPSWVNHNKPIDWTHCSSTHTDLVTDVIAPSPWTIFGCQNGLRLF KEAKDRDSHGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGPSRSKWDFCFYKGSVVEHLDGHMDIIHKELYNDWLPWGMKRRDFLLRRYWRREDDGTYVIL YHSVYHKKCPPQKGYVRACLKSGGYVISPVNHERRSVVKHMLAVDWKSWKSYLRTSSARSITIRMLERVAALRELFKAKLGNCPSSDFSSGELVGNMRLH QIEGDQRIDVQTPTNDGMTKECMNEEVDKTPSEHASLVGLNDPADEFFDVPEPSDYDQLENGWSSDFDPEMYSQDARQPKLSTAAGFVKKLHELAVQKRG YVDLQEMVREDSISCCYGTTLLKDPTFTLPSSWATADPSSFLIRGKNYLEDQKKFKANGTLMQMVAADWLRSDKREDDLAGRPGSIVQKYAAQGGPEFFF IVNIQVPGSTTYSLALYYMMNTPVEDAPLLESFIEGDDAYRNSRFKLIPYISKGSWIVKQSVGKKACLIGQALEMNYFRGKNYLELGVDIGSSTVARGVV SLVLGYLSNLVIEMAFLIQANTDEELPEYLLGTCRLNHLDASKAVLLKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28320			Pleckstrin homology (PH) and l...		Potri.009G011200 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	1.73	0.9407	CESA.2
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	3.46	0.9152
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	4.58	0.9016
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Potri.003G090300 [exp]	6.55	0.8498
AT2G22120			RING/FYVE/PHD zinc finger supe...		Potri.007G085900 [exp]	7.34	0.8716
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	7.34	0.9142
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.008G116400 [exp]	8.06	0.9113
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	11.83	0.9133
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	16.73	0.8977
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	18.16	0.9079

Compare expression of checked genes

Potri.009G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.