Plant FIBer expression Database

Potri.009G011400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08030 525 / 0 AQC1, TPST active quiescent center1, tyrosylprotein sulfotransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016093
[exp]
503 / 3e-177 AT1G08030 467 / 3e-163 active quiescent center1, tyrosylprotein sulfotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03567 Sulfotransfer_2 Sulfotransferase family
Representative CDS sequence
>Potri.009G011400.1 pacid=42770904 polypeptide=Potri.009G011400.1.p locus=Potri.009G011400 ID=Potri.009G011400.1.v4.1 annot-version=v4.1
ATGGATCCTACTCTGAAGCTGCTTGCCTTTCTGATTCTTGTTTTGGCCAATATCTGTCCCATCAAGAGTGATTTTAGCCACTGTGAAAAGGTTGTTAAAA
ACTGGGCATTCTCTTCCCTTCAACAACGAGTTAAAGAGGACAAGCATACACTTCGAGATTTGTTGTTTTTCCTTCATGTCCCCAGAACTGGTGGCCGCAC
GTATTTTCACTGTTTCTTGAAAAGGTTGTACGCTAATGCTCAAGAATGCCCCCGTTCTTATGATAAGCTACGGTTTGATCCAAGAAAGCAGGAATGCAGG
TTGTTGGCAACTCATGATGACTATAGCATGATGTCCAAACTTCCCAAGGAGAAAACTTCGGTGGTGACCATTCTTAGAAATCCAGTTGACCGTATCTTTA
GCACTTATGAATTCTCAATTGAAGTTGCAGCTAGGTTTTTGGTGCATCCTAACTTAACTTCTGCTACAAAAATGGTTGGCCGCTTGCGCCCTGGAGCTAC
TGGAGTCAGTACATTGGATATATGGCCGTGGAAATATTTGGTCCCGTGGATGAGGGAAGACCTTTTTGCTCGGAGGGATGCTAGAAAAATGATGGGCTCA
ATTGACATTAAGAGGAATGACCCATACAACATGGAGGAAATGGTGATGCCTTTACAGGAATATATCAATGACCCTAGAGCTCATGAGCTTGTACACAATG
GAGAGACGTTCCAGGTTGCAGGATTGACAAACAACTCTTATTTTGCGGAATCACATGAAGTGCGTTGTTGTGTGCAGAAGCATAAGATTCTTGGTGAACA
TGTTCTTGAAGTTGCAAAGAAGAGGTTGGATGATATGCTATATGTTGGACTCACTGAGGACCACAGAGAGTCTGCAACTATGTTTGCAAATGTAGTCGGT
GCACAGGTGATTTCTCAGGCATTAACAGAAAATTCTAGCATGGAGAGTGCTGCTAATAGCAAATCAGGGCAGGGTTCTTCGCATTCTGAATCATTGCCTG
ACAATGATGATAATCAGGATAGCACTTCAGACCACAAGGCAGATGAAATTGGTTCCACAGAGGATCTGGAAGAGAAGAAAGAAACTATGACTGTGGGTAA
ACTTATGGAAGCTTATGAAGGCTGCATTTCTAGTTTACGAAAGACCCAGTCACGGCGCCGCAAGTCTTCTTTGAAGAGAATCTCTCCAGCAAACTTTTCG
AAGGAGGATCGCAGTAGGGTTTCTGAGGTGGTTATTGAGCAGATAAGATCACTAAACCACCTTGATTTCGAGCTATATAAATATGCTCAGGAGATCTTTG
CAAAGCAACACAAGCATGTGGTGGAAAAGTTGTCTAGTATGGAGTCGGAGAGCATGTTCAACAACCCTGGTGGGATCACGATGTGGAAATTCTTTTCATC
AGCCATGTGCATTGTCGTCCTCCTTGCACTCCTTTTCCTATTTGTAAATGCAAGAAGAAGAATGTCGAAAGTTAAGATATAA
AA sequence
>Potri.009G011400.1 pacid=42770904 polypeptide=Potri.009G011400.1.p locus=Potri.009G011400 ID=Potri.009G011400.1.v4.1 annot-version=v4.1
MDPTLKLLAFLILVLANICPIKSDFSHCEKVVKNWAFSSLQQRVKEDKHTLRDLLFFLHVPRTGGRTYFHCFLKRLYANAQECPRSYDKLRFDPRKQECR
LLATHDDYSMMSKLPKEKTSVVTILRNPVDRIFSTYEFSIEVAARFLVHPNLTSATKMVGRLRPGATGVSTLDIWPWKYLVPWMREDLFARRDARKMMGS
IDIKRNDPYNMEEMVMPLQEYINDPRAHELVHNGETFQVAGLTNNSYFAESHEVRCCVQKHKILGEHVLEVAKKRLDDMLYVGLTEDHRESATMFANVVG
AQVISQALTENSSMESAANSKSGQGSSHSESLPDNDDNQDSTSDHKADEIGSTEDLEEKKETMTVGKLMEAYEGCISSLRKTQSRRRKSSLKRISPANFS
KEDRSRVSEVVIEQIRSLNHLDFELYKYAQEIFAKQHKHVVEKLSSMESESMFNNPGGITMWKFFSSAMCIVVLLALLFLFVNARRRMSKVKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08030 AQC1, TPST active quiescent center1, tyro... Potri.009G011400
[exp]
0 1
AT1G10290 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dy... Potri.003G001400
[exp]
8.06 0.8930 Pt-DH1.2
AT1G49040 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE... Potri.012G060800
[exp]
11.53 0.8551 SCD1.2
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
12.00 0.8275
AT5G62310 IRE INCOMPLETE ROOT HAIR ELONGATIO... Potri.012G127800
[exp]
13.85 0.8797
AT3G53540 unknown protein Potri.016G080200
[exp]
14.69 0.8703
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Potri.011G090900
[exp]
14.96 0.8907
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.006G109200
[exp]
16.24 0.8630
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
16.97 0.8515
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Potri.001G357600
[exp]
18.97 0.8767
AT4G00290 Mechanosensitive ion channel p... Potri.014G088200
[exp]
19.59 0.8568

Potri.009G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.