Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IVD.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45300 694 / 0 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1) AT3G51840 150 / 7e-41 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G06810 95 / 1e-20 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT5G65110 68 / 5e-12 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 45 / 9e-05 ATACX3, ACX3 acyl-CoA oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118000 [exp] 151 / 5e-41 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 144 / 2e-38 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.010G010448 [exp] 95 / 1e-20 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.008G219000 [exp] 94 / 2e-20 AT3G06810 1236 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.005G077600 [exp] 66 / 2e-11 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.007G090400 [exp] 64 / 8e-11 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.019G092600 [exp] 43 / 0.0004 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.013G123500 [exp] 42 / 0.001 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036122 [exp] 719 / 0 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Lus10027811 [exp] 148 / 6e-40 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1) Lus10020908 [exp] 101 / 8e-23 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10033467 [exp] 96 / 5e-21 AT3G06810 1258 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10041711 [exp] 59 / 5e-09 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 42 / 0.0009 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF02771 [poplar] [flax] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain CL0087 [poplar] [flax] Acyl-CoA_dh PF08028 [poplar] [flax] Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G011700.1 pacid=42770967 polypeptide=Potri.009G011700.1.p locus=Potri.009G011700 ID=Potri.009G011700.1.v4.1 annot-version=v4.1 ATGAAGAGAGTGTTTGGTGCGGCCGCGAGGAGGTCTCTGTCTCTTTTAAATACAAACAAGAAAAAACTCCCACATCCTCCTCCTCCTTCTGCCCCTTCTT TCTCCACCGCTTCTACCTCTTTTCTATTCGATGATACTCAACTCCAGTTTAAAGAAAGTGTTTCTCAATTTGCTCAAGAAAACATAGCGCCTCATGCCTC CACAATAGACCAATCAAATTATTTCCCCAAGGAAGTCAACTTATGGAAACTCATGGGAGACTTTAATCTACATGGGATTACTGCACCAGAGGAATATGGT GGACTTGGTCTTGGTTACTTATACCACTGCGTAGCAATGGAAGAAATTAGTCGTGCTTCAGGATCTGTTGGCCTTTCTTATGGTGCCCATTCTAACCTCT GCATAAATCAGTTGGTGAGGAATGGAAATCCTGCTCAAAGACAAAAATACTTGCCCAAGCTTATTAGTGGAGAGCATGTAGGAGCACTTGCAATGAGTGA ACCCAATGCTGGCTCTGATGTTGTTAGCATGAAATGCAAAGCTGATCGTGTTGATGGAGGCTATATCATAAATGGAAACAAGATGTGGTGCACCAATGGG CCAGTTGCTCAGACATTGGTTGTTTATGCAAAAACCAATGTCACAGCTGGATCAAAAGGAATCACGGCATTTATCATTGAGAAGGGAATGCCTGGATTTA GCACTGCCCAGAAATTAGACAAGCTTGGGATGAGAGGAAGTGATACATGTGAGCTTGTGTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGCA GGAAGGAAAAGGTGTGTATGTCATGATGTCAGGGCTGGATCTGGAGAGGCTTGTGTTGGCTGCTGGGCCACTTGGCATCATGCAGGCATGTCTTGACGTT GTTCTTCCTTACATTCGACAAAGAGAACAGTTTGGCCATCCAATTGGAGAGTTTCAGTTTATTCAGGGGAAGATTGCTGACATGTATACTTCCTTACAAT CTTCAAGGTCCTATGTTTATTCCGTCGCAAGGGATTGTGACAGTGGTAGAATTGACCCTAAGGATTGTGCTGGAGTCATACTTTGTGCGGCTGAAAGAGC GACCCAAGTTGCTTTGCAGGCTATACAATGTTTAGGTGGAAATGGATATGTAAATGAGTACTCAACTGGTCGTCTTCTTCGAGATGCAAAACTATATGAG ATCGGAGCAGGGACTAGTGAGATCAGAAGAATGATCATTGGTCGTGAACTCTTTAAGCAGTAA
AA sequence Show only first row Show all	>Potri.009G011700.1 pacid=42770967 polypeptide=Potri.009G011700.1.p locus=Potri.009G011700 ID=Potri.009G011700.1.v4.1 annot-version=v4.1 MKRVFGAAARRSLSLLNTNKKKLPHPPPPSAPSFSTASTSFLFDDTQLQFKESVSQFAQENIAPHASTIDQSNYFPKEVNLWKLMGDFNLHGITAPEEYG GLGLGYLYHCVAMEEISRASGSVGLSYGAHSNLCINQLVRNGNPAQRQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADRVDGGYIINGNKMWCTNG PVAQTLVVYAKTNVTAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDV VLPYIRQREQFGHPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDSGRIDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYSTGRLLRDAKLYE IGAGTSEIRRMIIGRELFKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Potri.009G011700 [exp]	0	1	IVD.1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	4.79	0.8609	ALDH7.1
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051900 [exp]	8.71	0.8534
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.006G052800 [exp]	17.54	0.8287
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	25.09	0.8169
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	32.93	0.8468	AAT.2
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	37.34	0.7899
AT1G27290			unknown protein		Potri.001G058100 [exp]	40.14	0.8304
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	42.60	0.7725
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	49.65	0.8270
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G084800 [exp]	54.54	0.8128	IFS1.47,CYP736A4v1

Compare expression of checked genes

Potri.009G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.