Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60450 830 / 0 ARF ARF4 auxin response factor 4 (.1) AT2G33860 416 / 1e-136 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 359 / 9e-112 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 326 / 3e-101 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G37020 327 / 1e-100 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 331 / 2e-100 ARF ARF6 auxin response factor 6 (.1.2) AT3G61830 318 / 5e-99 ARF ARF18 auxin response factor 18 (.1) AT2G46530 311 / 3e-96 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G19850 305 / 6e-91 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT4G23980 293 / 6e-89 ARF ARF9 auxin response factor 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059300 [exp] 425 / 3e-138 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.004G050150 [exp] 418 / 1e-135 AT2G33860 562 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.014G135300 [exp] 361 / 8e-114 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 363 / 2e-113 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 356 / 1e-110 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 347 / 7e-108 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 339 / 3e-106 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 334 / 2e-104 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G066200 [exp] 337 / 4e-104 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013942 [exp] 412 / 2e-134 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 405 / 3e-131 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10043200 [exp] 353 / 2e-109 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 348 / 1e-107 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10024455 [exp] 333 / 2e-103 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10007440 [exp] 332 / 3e-103 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 325 / 6e-101 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10031354 [exp] 327 / 4e-100 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 326 / 9e-100 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 325 / 2e-99 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.009G011800.8 pacid=42772391 polypeptide=Potri.009G011800.8.p locus=Potri.009G011800 ID=Potri.009G011800.8.v4.1 annot-version=v4.1 ATGGAAATTGATCTGAATCATCCAGTGACTGAGGTGGAGAAGAATTCATTTTGTACCAATGGGGACTCTTCATGTTCTTCTAATTCATCTTCATCTCCAG TTTCCTCTTCAATTTACTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACTTCTCTCCCTAAGAAAGGGAATGTGGTTGTCTACTTCCCTCAAGGCCA CTTGGAGCAGCTTGCCTCTTCCTCTCCTTTCTCTCATAGGGACATGCCCAATTTTGATCTCCACCCACAAATATTTTGCAAAGTTGTAAATGTGCAGCTA CTTGCCAATAGGGAAAATGATGAGGTCTACACTCGGCTTACTTTGCTTCCTCAACCAGAGGTGGTAGGACAGGATTTAGAAGGCAAAGAGCTTCAAGAGT TAGGCGTGGATGGAGAGGGTGACGACGCATCACCAACAAAATCAACCCCACACATGTTTTGCAAAACACTCACAGCTTCTGATACTAGCACCCATGGAGG GTTTTCCGTTCCTCGAAGAGCTGCCGAAGACTGTTTCCCTTCACTGGATTATAAACAGCAGAGACCCTCTCAAGAGCTTTTGGCCAAAGACTTGCATGGA GTTGAATGGAGATTTCGTCATATTTACAGAGGTCAACCAAGAAGGCATCTTCTAACTACGGGATGGAGTATTTTTGTGAGTCAAAAGAATCTTGTTTCAG GGGATGCAGTGCTATTTCTGAGGGGCGAAGGTGGAGAGTTGAGACTGGGGATCAGACGAGCTGCTCGACCTAGAAATGGTCTTCCTGATTCTGTTACTGG CAAGCAGAATTCACTTCCCAGTGCTCTCTCCTTGGTGTCTAATGCAATATCCACCAAGAGCGTGTTCACTGTTTCATATAGTCCAAGGGCCACTCATGCA GTGTTTGTTGTACCCTACCAAAAGTATATAAAAAGCATCACCAATGCAGTTTGCATCGGGACAAGATTCAAAATGAGATTTGAAATGGATGATTCTCCTG AAAGAAGGTGTAGCGGTGTAGTAACTGGAACAGCTGACTTGGATCCCTATAAGTGGCCCAACTCAAAATGGAGGTGCTTAATGGTTAGATGGGATGAAGA TGTCATCAGTGATCATCAAGAACGAGTTTCCCCATGGGAAATTGACGCTTCTGTTTCACTCCCACCCTTGATTATTCAATCTTCACCAAGGTTGAAGAAA CTGCGGACTGGGCTGCAAGCAGCCCCACCTGATAAGCCCATAGCTGGAGGGGGTGGGTTTTTGGATTTCAAGGAGTCTGTAAGATCCTCCAAGGTCTTGC AAGGTCAAGAAAATGTTGGTTTGCTATCACCCGTGTATCGATGTGATACTGTAAACCATCCACTGGATTTTGAGGTGCGGAATAAAGCACAACAAAATCT CATATTGACAGGAATAGAGAAGGCTAAAATCAGTGAGTTAACTAGAGCTCACCCTGCCACCCACACAGGATTCACGGAATCTGATAGGTTCCTGAAGGTC TTGCAAGGTCAAGAAATATGCTCGTTGAGTTCTGTTGGTGCTTTGGGAAAGCCCAATACTGGACGCAGTTCTTTCCAGATGTATCCAGGACCAAGACCCG CTTTCTATCCTGTAGCAGCAGAAAGCCTTAGAAGTATGTACTTTCCCTATGGAGATGTATACAAAAATGGTCAAGATCCCAGAACACAATCTTATGCTAT CTTCTCTAGAGAAAATGCCCATTTCAATACATCTTCTATTCAGACTTGTGTGGTTAGGGAAGAAGTTAGAAAGCCTAATCAATCAAGCGAGTATAAGACA CAAGAAAGTATTTCTGCTGCACCGGCTTTATGTGCAAATCTAAGAAACCAAAAGGATGACTTTTTTAATGGGAATGCTACTGGCTGCAAACTTTTTGGGT TCTCCTTGAATGCAGAAACATCTCCAAATTCGCAGAACACTAGTAAGAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTGGTCGGAAGAGCTATTGA TCTTTCAAGGCTGAATGGCTATAGTGATCTCTTGAATGAACTAGAGCGACTATTTAGCATGGAGGGTCTTTTACGAAATCCTGAGGAAGGATGGCGAATC TTGTATACTGACAGTGAGAATGATGTTATGGTTGTCGGAGATGACCCATGGCTTGAGTTCTGTAATGTGGCAACCAAGATCCATATATATACCCAAGAAG AAGTGGAGAAGATGACCGTTGGAATTACTGGGGACGATACTCAAAGTTGTTTGGATCAAGCCCTGTGA
AA sequence Show only first row Show all	>Potri.009G011800.8 pacid=42772391 polypeptide=Potri.009G011800.8.p locus=Potri.009G011800 ID=Potri.009G011800.8.v4.1 annot-version=v4.1 MEIDLNHPVTEVEKNSFCTNGDSSCSSNSSSSPVSSSIYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQLASSSPFSHRDMPNFDLHPQIFCKVVNVQL LANRENDEVYTRLTLLPQPEVVGQDLEGKELQELGVDGEGDDASPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPSLDYKQQRPSQELLAKDLHG VEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGEGGELRLGIRRAARPRNGLPDSVTGKQNSLPSALSLVSNAISTKSVFTVSYSPRATHA VFVVPYQKYIKSITNAVCIGTRFKMRFEMDDSPERRCSGVVTGTADLDPYKWPNSKWRCLMVRWDEDVISDHQERVSPWEIDASVSLPPLIIQSSPRLKK LRTGLQAAPPDKPIAGGGGFLDFKESVRSSKVLQGQENVGLLSPVYRCDTVNHPLDFEVRNKAQQNLILTGIEKAKISELTRAHPATHTGFTESDRFLKV LQGQEICSLSSVGALGKPNTGRSSFQMYPGPRPAFYPVAAESLRSMYFPYGDVYKNGQDPRTQSYAIFSRENAHFNTSSIQTCVVREEVRKPNQSSEYKT QESISAAPALCANLRNQKDDFFNGNATGCKLFGFSLNAETSPNSQNTSKRSCTKVHKQGSLVGRAIDLSRLNGYSDLLNELERLFSMEGLLRNPEEGWRI LYTDSENDVMVVGDDPWLEFCNVATKIHIYTQEEVEKMTVGITGDDTQSCLDQAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	1.00	0.8865
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	3.16	0.8342
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.011G055500 [exp]	4.89	0.8313
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	12.24	0.7562	CCRL2,CCR.9
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	13.85	0.8265
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	14.83	0.8104
AT1G80530			Major facilitator superfamily ...		Potri.001G204700 [exp]	18.00	0.7476
AT5G45470			Protein of unknown function (D...		Potri.015G113400 [exp]	21.16	0.7891
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	25.69	0.7736
AT5G67390			unknown protein		Potri.007G053300 [exp]	26.26	0.7575

Compare expression of checked genes

Potri.009G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.