Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BGAL8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 1281 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 933 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 919 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G36360 912 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT5G20710 827 / 0 BGAL7 beta-galactosidase 7 (.1) AT3G52840 810 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 807 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 802 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G63810 785 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G56870 783 / 0 BGAL4 beta-galactosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044300 [exp] 973 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 925 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 916 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 912 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.017G057900 [exp] 912 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.003G038500 [exp] 907 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 904 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 902 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.001G025701 [exp] 849 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000271 [exp] 1101 / 0 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10015625 [exp] 927 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 927 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 922 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10016655 [exp] 912 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10006733 [exp] 906 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10041798 [exp] 897 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 892 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10011237 [exp] 875 / 0 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10022645 [exp] 857 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.009G012400.2 pacid=42772653 polypeptide=Potri.009G012400.2.p locus=Potri.009G012400 ID=Potri.009G012400.2.v4.1 annot-version=v4.1 ATGAGAGGAAGGGATCAGATTCTTCAGCTGCTGCTCCTGTATGTGTTTTTGTCTGTGCTTCTAACATTAGCAACGACGTCCTATGGAGTCAATGTGACTT ACGATCATAGGGCCTTGTTGATTGATGGAAAACGCAGAGTCTTGGTCTCCGGTTCCATTCATTATCCTCGCAGTACAGTCGAGATGTGGGCTGACCTTAT ACAAAAATCTAAAGATGGAGGGTTGGACGTTATTGAGACTTATGTTTTCTGGAATGCACACGAGCCTGTTCAAAACCAGTATAATTTTGAAGGAAGATAT GATCTGGTGAAATTTATCAAGTTAGTGGGAGAAGCTGGACTTTATGCTCATCTTCGGATTGGTCCGTATGTCTGCGCAGAGTGGAATTATGGTGGGTTTC CTCTTTGGTTGCATTTTGTACCGGGAATCAAGTTTCGAACTGATAACGAGCCATTCAAGGCTGAGATGCAGCGGTTTACGGCCAAGATTGTGGACATGAT GAAGCAGGAGAAGCTTTATGCATCTCAAGGAGGGCCCATCATTTTATCGCAGATTGAAAATGAGTACGGAAACATTGATTCATCCTATGGACCTGCTGCT AAAAGCTATATCAATTGGGCAGCAAGCATGGCTGTGTCTCTGGATACTGGAGTTCCCTGGGTTATGTGCCAGCAAGCAGATGCTCCTGATCCCATTATAA ACACCTGCAATGGATTCTACTGTGACCAGTTCACCCCCAATTCTAAAAACAAACCCAAGATGTGGACTGAGAATTGGAGTGGATGGTTCCTTTCCTTTGG CGGTGCTGTTCCCTATAGACCTGTTGAAGACCTTGCATTTGCTGTGGCACGGTTTTACCAGCTAGGGGGGACTTTTCAAAACTATTATATGTACCATGGT GGGACTAACTTTGGCCGGAGTACTGGTGGACCTTTTATTTCTACAAGTTATGATTACGATGCTCCTCTTGATGAATACGGACTTACAAGACAACCTAAGT GGGGTCATCTGAAGGATTTGCATAAGTCCATAAAGCTTTGTGAAGAAGCATTGGTGGCGACTGATCCAGTAACTTCATCTCTAGGTCAAAACTTGGAGGC TACTGTTTATAAAACCGGAACTGGGCTATGCTCTGCTTTTCTAGCCAATTTTGGCACATCTGACAAAACTGTAAATTTCAATGGCAATTCGTATAACTTG CCTGGTTGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGCTCTTAATACAGCAAAGATTAACTCTATGACAGTGATTCCAAACTTTGTACATCAAT CTCTAATTGGAGATGCGGATTCTGCTGATACACTCGGCTCTAGCTGGAGTTGGATATATGAACCAGTAGGTATCTCAAAGAATGATGCATTCGTGAAACC TGGACTATTGGAGCAGATAAATACTACAGCTGATAAAAGTGACTACTTATGGTACTCACTGAGTACTGTTATCAAAGATAATGAGCCTTTTCTTGAAGAT GGATCTCAAACTGTTCTTCATGTGGAGTCTCTTGGCCACGCCCTTCATGCTTTTGTTAATGGAAAGCTTGCAGGTAGTGGAACAGGAAATGCTGGCAATG CTAAGGTTGCAGTGGAGATTCCTGTCACACTCTTACCTGGGAAGAACACTATCGATCTCCTTAGTTTGACTGCAGGACTTCAGAACTATGGAGCTTTTTT TGAGTTAGAGGGTGCAGGGATTACTGGTCCAGTAAAACTGGAAGGCCTGAAAAATGGCACTACTGTTGACCTTTCTTCATTGCAGTGGACATATCAGATT GGACTTAAAGGTGAAGAATCAGGCCTGTCTAGTGGAAATTCTCAATGGGTTACACAACCTGCCTTGCCCACGAAGCAGCCTTTGATCTGGTACAAGACCA GTTTCAATGCCCCTGCTGGAAATGACCCAATTGCAATTGATTTCTCGGGGATGGGGAAGGGTGAGGCATGGGTGAATGGACAAAGCATTGGACGTTATTG GCCCACCAAGGTGTCTCCAACTAGTGGTTGCTCCAACTGCAATTACAGAGGATCTTACAGTTCAAGCAAATGTCTCAAGAACTGTGCAAAGCCTTCTCAG ACATTATACCATGTGCCCCGTTCATGGGTGGAATCAAGTGGCAACACTCTTGTGTTGTTTGAGGAAATTGGAGGGGATCCAACTCAGATAGCTTTCGCTA CAAAACAGAGCGCAAGTTTGTGCTCACACGTGTCAGAGTCTCACCCATTACCCGTAGATATGTGGAGCTCAAATTCAGAAGCAGAAAGAAAAGCAGGGCC AGTACTATCATTGGAGTGCCCCTTTCCTAATCAGGTCATTTCTTCAATCAAATTTGCAAGCTTTGGAACCCCCCGAGGAACTTGTGGGAGTTTCAGTCAC GGCCAGTGCAAAAGCACTAGGGCCCTTTCTATTGTACAGAAGGCTTGCATCGGATCAAAGAGTTGCAGCATTGGAGCATCAGCCAGTACATTTGGTGACC CATGCAGGGGAGTAGCAAAGAGTTTAGCAGTTGAAGCTTCCTGCGCATAA
AA sequence Show only first row Show all	>Potri.009G012400.2 pacid=42772653 polypeptide=Potri.009G012400.2.p locus=Potri.009G012400 ID=Potri.009G012400.2.v4.1 annot-version=v4.1 MRGRDQILQLLLLYVFLSVLLTLATTSYGVNVTYDHRALLIDGKRRVLVSGSIHYPRSTVEMWADLIQKSKDGGLDVIETYVFWNAHEPVQNQYNFEGRY DLVKFIKLVGEAGLYAHLRIGPYVCAEWNYGGFPLWLHFVPGIKFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSSYGPAA KSYINWAASMAVSLDTGVPWVMCQQADAPDPIINTCNGFYCDQFTPNSKNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFYQLGGTFQNYYMYHG GTNFGRSTGGPFISTSYDYDAPLDEYGLTRQPKWGHLKDLHKSIKLCEEALVATDPVTSSLGQNLEATVYKTGTGLCSAFLANFGTSDKTVNFNGNSYNL PGWSVSILPDCKNVALNTAKINSMTVIPNFVHQSLIGDADSADTLGSSWSWIYEPVGISKNDAFVKPGLLEQINTTADKSDYLWYSLSTVIKDNEPFLED GSQTVLHVESLGHALHAFVNGKLAGSGTGNAGNAKVAVEIPVTLLPGKNTIDLLSLTAGLQNYGAFFELEGAGITGPVKLEGLKNGTTVDLSSLQWTYQI GLKGEESGLSSGNSQWVTQPALPTKQPLIWYKTSFNAPAGNDPIAIDFSGMGKGEAWVNGQSIGRYWPTKVSPTSGCSNCNYRGSYSSSKCLKNCAKPSQ TLYHVPRSWVESSGNTLVLFEEIGGDPTQIAFATKQSASLCSHVSESHPLPVDMWSSNSEAERKAGPVLSLECPFPNQVISSIKFASFGTPRGTCGSFSH GQCKSTRALSIVQKACIGSKSCSIGASASTFGDPCRGVAKSLAVEASCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.009G012400 [exp]	0	1	BGAL8.1
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.010G071200 [exp]	4.00	0.7749
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.002G037100 [exp]	5.00	0.7779
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	9.32	0.7678
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	10.00	0.7605
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	13.85	0.7610
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	15.42	0.7251
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	17.14	0.7540	Pt-ALA5.2
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.008G133400 [exp]	19.97	0.7091
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	22.09	0.7427
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.018G124754 [exp]	24.91	0.7050

Compare expression of checked genes

Potri.009G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.