Plant FIBer expression Database

Potri.009G012700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60540 386 / 4e-137 EMB2407, ATPDX2, PDX2 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041445
[exp]
427 / 2e-153 AT5G60540 388 / 5e-138 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Lus10034326
[exp]
422 / 2e-151 AT5G60540 389 / 2e-138 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF07685 GATase_3 CobB/CobQ-like glutamine amidotransferase domain
Representative CDS sequence
>Potri.009G012700.1 pacid=42772095 polypeptide=Potri.009G012700.1.p locus=Potri.009G012700 ID=Potri.009G012700.1.v4.1 annot-version=v4.1
ATGGCCGCCGTCGGCGTTCTTGCTTTACAGGGTTCTTTCAACGAACACATTGCAGCGCTTGCCAGATTGGGAGTTAAGGGAATGGAGATAAGGAAGCCAG
AACAACTTCAAAATGTCACCTCTCTTATTATTCCGGGTGGTGAAAGCACTACTATGGCTAAACTCGCTGAGTTTCACAACCTGTTTCCTGCTTTACGTGA
GTTTGTTCAAATGGGAAAGCCTGTATGGGGGACCTGTGCAGGTCTTATCTTCTTGGCAAACAAGGCAATTGGTCAGAAAACTGGAGGACAAGAACTGGTT
GGTGGCCTAGATTGCACTGTTCATAGAAATTATTTCGGCAGTCAGATTCAAAGTTTTGAAGCGGAGCTTACAGTTCCAGAACTTGCGTGTAAGGAAGGTG
GCCCTGAAACGTTCCGTGGAGTTTTCATCCGTGCTCCTGCCATCCTTGAAGTCGGGCCTGGAGTTGATGTGCTGGCTGAGTGTCCTGTTCCATCTACCAA
TGTATTGTATTCAAGTTCTGCTGTTCAAATCCAAGAGGAAAATTCCGTGCCAGAAGAGAAAGTTATTGTAGCTATAAAGCAGAGGAATTTGCTAGGGACT
GCTTTTCATCCTGAACTGACAGCTGATACTAGATGGCATAGCTACTTCTTGAAGATGGCAAGCGAGGCTGGAGAAGCAACCTCTGGAAGCATTGTCCCAG
CTGGAGGAGTGGATCTAAGCAGCTATGATGGAAAACCACGGATTGATCTCCCTATATTTCAATAG
AA sequence
>Potri.009G012700.1 pacid=42772095 polypeptide=Potri.009G012700.1.p locus=Potri.009G012700 ID=Potri.009G012700.1.v4.1 annot-version=v4.1
MAAVGVLALQGSFNEHIAALARLGVKGMEIRKPEQLQNVTSLIIPGGESTTMAKLAEFHNLFPALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQELV
GGLDCTVHRNYFGSQIQSFEAELTVPELACKEGGPETFRGVFIRAPAILEVGPGVDVLAECPVPSTNVLYSSSAVQIQEENSVPEEKVIVAIKQRNLLGT
AFHPELTADTRWHSYFLKMASEAGEATSGSIVPAGGVDLSSYDGKPRIDLPIFQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60540 EMB2407, ATPDX2... EMBRYO DEFECTIVE 2407, pyridox... Potri.009G012700
[exp]
0 1
AT5G60590 DHBP synthase RibB-like alpha/... Potri.009G025500
[exp]
3.46 0.9142
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Potri.016G066000
[exp]
6.16 0.9031
AT4G28740 unknown protein Potri.014G194500
[exp]
9.79 0.9229
AT1G67700 unknown protein Potri.010G053600
[exp]
20.39 0.9184
AT3G19220 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U ME... Potri.009G102400
[exp]
22.36 0.9140
AT1G22430 GroES-like zinc-binding dehydr... Potri.018G142700
[exp]
22.44 0.8941 HNL.4
AT5G51010 Rubredoxin-like superfamily pr... Potri.015G108100
[exp]
24.31 0.9163
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.013G037700
[exp]
28.28 0.8973
AT3G14420 Aldolase-type TIM barrel famil... Potri.011G112700
[exp]
36.74 0.9139
AT5G17670 alpha/beta-Hydrolases superfam... Potri.013G070700
[exp]
37.60 0.9131

Potri.009G012700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.