Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60550 535 / 0 ATSNAK1, GRIK2 geminivirus rep interacting kinase 2 (.1) AT3G45240 518 / 0 ATSNAK2, GRIK1 geminivirus rep interacting kinase 1 (.1.2.3) AT3G29160 164 / 2e-46 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT3G01090 163 / 6e-45 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT2G25090 157 / 5e-43 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G10930 156 / 7e-43 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G35410 155 / 2e-42 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 152 / 6e-41 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 151 / 1e-40 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G39440 151 / 1e-40 SnRK1.3 SNF1-related protein kinase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010700 [exp] 367 / 5e-126 AT3G45240 370 / 1e-127 geminivirus rep interacting kinase 1 (.1.2.3) Potri.003G215201 [exp] 365 / 3e-124 AT5G60550 330 / 1e-110 geminivirus rep interacting kinase 2 (.1) Potri.004G115900 [exp] 168 / 9e-47 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 167 / 2e-46 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.016G133500 [exp] 153 / 2e-41 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.014G104200 [exp] 152 / 4e-41 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 151 / 4e-41 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G263500 [exp] 151 / 5e-41 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G062800 [exp] 149 / 6e-40 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037414 [exp] 581 / 0 AT5G60550 533 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10041298 [exp] 569 / 0 AT5G60550 532 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10012696 [exp] 165 / 3e-45 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 165 / 4e-44 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035801 [exp] 153 / 5e-41 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10022749 [exp] 151 / 5e-41 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10024448 [exp] 152 / 6e-41 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 150 / 1e-40 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10014163 [exp] 150 / 1e-40 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 149 / 5e-40 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.009G012900.2 pacid=42772758 polypeptide=Potri.009G012900.2.p locus=Potri.009G012900 ID=Potri.009G012900.2.v4.1 annot-version=v4.1 ATGATACATAAGAGCTATTCGTTTGCTCGAGCAATGGGTTGTTGTAGCTGTTTTGGCTTCCTTAGGAAGCCCAAGCGAAGACCCGTGCCCATTTCTAGCG GCGGGAGAAATTATCATCACCACAATAATAATAATCATCTCTCCCAGGAATTATTATTAGATAGTGAAATTGATGATGATGGTGGGGAGGATGATGGTTC TTTTAATGGTGACATTACGGGCACTAGTTATTGTGATTATGCCGAGTTGCCGAATCGTGCCAAACGCTCTGAAGAGAATTTAAGACTTAGGGAACTGAAT GGATTGGTTTGCAGGAAATCTCCTGTCAAGGAAACCCATCTACTCGTTCGCTCTGAGGATGAAGATGGTAATAAGATGATCAATGAATATGTTCGCCAGT ATAAGATTGGTGCTGGTAGCTATGGCAAAGTGGTTTTATATCAAAGCAGTATAGATGGAAACCTTTGTGCAATTAAGGCCTTTCATAAGTCTCATTTGTT GAAGCTGCGGGTTGCTCCTTCAGAGACTGCAATGACTGATGTTCTTCGTGAGGTTCAAATCATGAAAATGTTGGACCATCCTAATATTGTCAATCTCATT GAGGTGATTGATGACCCAAATACAGATCACTTCTACATGGTTCTGGAATATGTGGATGGAAAATGGGTGTGGGAAGGATCCGGTCCTCCTGGTGGAATTG GTGAAGATACTGCTAGAAAGTATTTGCGGGATATTGTATCTGGGCTGATGTATCTTCATGCTCATAATATAGTGCATGGGGATATCAAACCTGACAATTT GTTGGTTACTCGCTCTGGTACAGTGAAGATAGGAGATTTCAGCGTCAGCCAGGTAGTTGAGGATGATAACGATGAACTTCGTAGATCTCCTGGGACTCCT GTTTTCACAGCGCCTGAGTGCTGTCTCGGTCTAACTTACCATGGCAAAGCTGCAGACACGTGGGCAGTGGGAGTGACTTTGTACTGTATGATACTCGGGC AATACCCATTTCTCGGAGAAACACTCCAGGATACATATGACAAGATTGTCAACAACCCCTTGGTGCTCCCTGATGAATTGAACTCGCAGCTGAAGGAATT ACTCGAGGGACTTCTTTGCAAAGACCCAGCTCAGAGGATGACACTGGACGCTGTCGCAAATCATACCTGGGTTATTGGGGATGATGGGCCGATTCCTCAG TTTTTGTGTTGGTGCAAGCGCAGTAGCAGGGAACCATCTGATGGGAACGACAATGGTATTCGCAACCACACCGAATCAAATGGTAGCGAGTTTGGCAAAA TTGTATAA
AA sequence Show only first row Show all	>Potri.009G012900.2 pacid=42772758 polypeptide=Potri.009G012900.2.p locus=Potri.009G012900 ID=Potri.009G012900.2.v4.1 annot-version=v4.1 MIHKSYSFARAMGCCSCFGFLRKPKRRPVPISSGGRNYHHHNNNNHLSQELLLDSEIDDDGGEDDGSFNGDITGTSYCDYAELPNRAKRSEENLRLRELN GLVCRKSPVKETHLLVRSEDEDGNKMINEYVRQYKIGAGSYGKVVLYQSSIDGNLCAIKAFHKSHLLKLRVAPSETAMTDVLREVQIMKMLDHPNIVNLI EVIDDPNTDHFYMVLEYVDGKWVWEGSGPPGGIGEDTARKYLRDIVSGLMYLHAHNIVHGDIKPDNLLVTRSGTVKIGDFSVSQVVEDDNDELRRSPGTP VFTAPECCLGLTYHGKAADTWAVGVTLYCMILGQYPFLGETLQDTYDKIVNNPLVLPDELNSQLKELLEGLLCKDPAQRMTLDAVANHTWVIGDDGPIPQ FLCWCKRSSREPSDGNDNGIRNHTESNGSEFGKIV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.009G012900 [exp]	0	1
AT1G16020			Protein of unknown function (D...		Potri.008G137000 [exp]	5.47	0.7658
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	6.00	0.7195
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	6.48	0.7232
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	16.88	0.6742
AT4G12790			P-loop containing nucleoside t...		Potri.014G174200 [exp]	17.66	0.6544
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	22.13	0.6847
AT1G69980			unknown protein		Potri.010G039466 [exp]	22.91	0.6833
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	26.00	0.6762	SINAT2.2
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	26.07	0.6451	Pt-ERF1.3
AT3G62450			unknown protein		Potri.005G071700 [exp]	27.74	0.6761

Compare expression of checked genes

Potri.009G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.