Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28450 870 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G21300 91 / 1e-18 RNA methyltransferase family protein (.1) AT3G19360 43 / 0.001 C3HZnF Zinc finger (CCCH-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195300 [exp] 96 / 2e-20 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041301 [exp] 1015 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10037411 [exp] 1014 / 0 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10000172 [exp] 81 / 1e-16 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10009743 [exp] 81 / 1e-15 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0063 [poplar] [flax] NADP_Rossmann PF05958 [poplar] [flax] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.009G013000.1 pacid=42772024 polypeptide=Potri.009G013000.1.p locus=Potri.009G013000 ID=Potri.009G013000.1.v4.1 annot-version=v4.1 ATGGCATCGTCATCTCCGAAGAACCAACTCTCTTCTTCTTCTGAAACCCTAAACCTCCCGTCCGAAACTTCCCTTACCCAGACCAACCCAATGAACGCCC AAGATTCACCCATTCCCCCTGAGCAACAAATCCAGCCGTCCAACAACCAAGATGACACCGCCACCACAACTGGGGAGAAGCGAAAGCGAGAGAAGACAAC AACAACAACGACAGAAGCAGAAACAGAAACAGAAACAGACCCTTCACTCAATCCATTCCATAAAACCTCGCTCTGTTCCTACTTCAGGCGGCACATGGGG GCCTCCTGTAGCCACGGCAGTGCGTGTAAGTACGCGCACGGCGAAGAGGAGTTGAGGCCCCGCCCGGATAACACCTGGGATCCTACCTCGGAGCGTGCCA AGAAAGCTATCAAGCTGGACACCACCAATAATAATGATAGCAAGGAAGAAGATGAAGATGAGGAGATCATGATGACTGATATTGCTGCTGACGGTGATGG TGATGGGGGTTGTTTGGATACTGGGCTTAGTAAATGCTTGGTACATTTGCCCCGCAAGTGGCTTTCTGATCATTTGAGGAAATTTCTAAGTGATCAAGGG ATTCTTTTCAAATCTGCTAAGAAAAAGAAAGGCATGTCCGTGGGTTTCCTAAGTTTCGAGGATGCTGAGCAATTGAAAAAAGCAATCGAGGAGCTGGAAG GAAGATCTATTGGAAACAAGAATATAAAGGTTGCCGATGTCATTCCCCGACAATTTGAGCAGAAAATCAAATCAGCAATGGCTGCCCCTCAAAACATTCC GCAGACAATGGAACCTGCATTGGATGGAGAAAATGCTGGGATCTCTAGACCTTCAGATGCTATTGGGGATGGTGATGGGAATAATGACAATTCAACACAA GATGGTTCAAGCTCTCAGGCCAAATGTGCCCGTGATGTCGCAACACCCCTTGCTCATATGCCTTATGATGATCAGTTGGAGCACAAGAAGAACTCTATCA TGCAAATGCTCAAAAAACTTACAAGAAATGCACGCAAAGCTTGTCCTAATGGAGTTTCTCTTCCAGAATGGATTCTCAAATCTAGAGAAATAGGTGGTCT TCCATGTGAACTAGAGGGTATACTTGAATCACCACTTAGAAATGGATATCGTAATAAATGCGAGTTTTCTGTTGGATATTCTCTTCAAGGAAAACCTACT GTGGGTTTTATGCTAGGAAACTTTAGGGAAGGTGTGACAGCTGTAGAAGAACCTCTTGGCTGCCCCAATGTTTCTAGTGTTGCCTGCAAGTATGCGTCAA TCTTTCAGGAATTTTTGCAACAATCTGGCTTGCCAATTTGGAATAGATTTAAGAATACTGGATTCTGGCGTCAATTAACGGTTCGAGAAGGAAGATTACC AAGGAAAGCTGCTGATATTGCAATTCCCGAGGCCCACATATCAGAGGTCATGCTTATTGTTCAGGTCTCCTCTGTGGGCTTTGATGATGACATGATAACC AATGAACTAAGGGGGTTGGCTCATGCATTTACCACTGGAGCTGCTGGAAGTGCTCCACCTTTGCCTTTAACAGCTTTGGTTATTCAGGATCACCAAGGAC TATCAAATGTTGCACCAGCTGATGCTCCATTGCGCACGCTACTCCTTCCAAATGCAAATGGTGGTTCCGAGGTTCAAGCAACCAGTAATGTTGCTGAAGC AAGAATTCATGATTATATAAGTAATCTTCGGTTCTCTATATCACCAACAGCTTTTTTCCAGGTTAACACCCTTGCTGCAGAGAAACTATACTCTCTTGCT GGGGATTGGGCTGGTCTTGGTCCAGATAGCTTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTCACTTTAGCAGATCGTGTTGGCATGGTTG TTGGCATTGAAATGAATGCTTCTGCAGTTTCAGATGCTCATCGGAATGCTGAAATTAATGGCATAAAAAACTGTAGATTTGTTTGTGCAAAGGCAGAGGA TGTGATTGGGTCTTTATTGAAGGAGTATCTAGATGTGCCTCAGAAAGAAGGTGAACAGCTGAATGCATCTGAAATCAGGGATAAAGAAATAGCAATGGTT GAAGTTAACAATGCTCCCATGGATGATGTCCTAGACTCTAGCAAGAACCCAAGCCATGATCTTGGAAATGGTGAAGGTGCTTCTGGGGAATCAGAAAATG ATGGACAAGAAATCCAAAGTCAACTTCAGAAGAGTTGCACATCAAAAGAAGGGAGTTCTTCAATGTTGCATTTTAAAAATGTTGTTGCCATTGTTGATCC TCCCCGTGGCGGGCTGCATCCCACTGTGATTAAAGTTCTGAGAACTCATTCACGTGTACGGAGACTTGTTTACATTTCTTGCAATCCTGAAACCTTAGTG GCCAATGCTATTGAGCTCTGCACCCCTTCTCCTGAGAAAGTTGAAAAAGGGAATAGAAACAGGGCATGGAGGAAGATGAGCAGCGCTGGTTTGGCACGGC ACAGAGTCAAGTCTATGCCCGTTTCAGAGCCTTTCCGACCTGTAAAATCCGTGGCTGTTGATCTTTTCCCACATACCTCACATTGCGAAATGGTGATGCT TCTGGAGAGGTAA
AA sequence Show only first row Show all	>Potri.009G013000.1 pacid=42772024 polypeptide=Potri.009G013000.1.p locus=Potri.009G013000 ID=Potri.009G013000.1.v4.1 annot-version=v4.1 MASSSPKNQLSSSSETLNLPSETSLTQTNPMNAQDSPIPPEQQIQPSNNQDDTATTTGEKRKREKTTTTTTEAETETETDPSLNPFHKTSLCSYFRRHMG ASCSHGSACKYAHGEEELRPRPDNTWDPTSERAKKAIKLDTTNNNDSKEEDEDEEIMMTDIAADGDGDGGCLDTGLSKCLVHLPRKWLSDHLRKFLSDQG ILFKSAKKKKGMSVGFLSFEDAEQLKKAIEELEGRSIGNKNIKVADVIPRQFEQKIKSAMAAPQNIPQTMEPALDGENAGISRPSDAIGDGDGNNDNSTQ DGSSSQAKCARDVATPLAHMPYDDQLEHKKNSIMQMLKKLTRNARKACPNGVSLPEWILKSREIGGLPCELEGILESPLRNGYRNKCEFSVGYSLQGKPT VGFMLGNFREGVTAVEEPLGCPNVSSVACKYASIFQEFLQQSGLPIWNRFKNTGFWRQLTVREGRLPRKAADIAIPEAHISEVMLIVQVSSVGFDDDMIT NELRGLAHAFTTGAAGSAPPLPLTALVIQDHQGLSNVAPADAPLRTLLLPNANGGSEVQATSNVAEARIHDYISNLRFSISPTAFFQVNTLAAEKLYSLA GDWAGLGPDSLLFDICCGTGTIGLTLADRVGMVVGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVIGSLLKEYLDVPQKEGEQLNASEIRDKEIAMV EVNNAPMDDVLDSSKNPSHDLGNGEGASGESENDGQEIQSQLQKSCTSKEGSSSMLHFKNVVAIVDPPRGGLHPTVIKVLRTHSRVRRLVYISCNPETLV ANAIELCTPSPEKVEKGNRNRAWRKMSSAGLARHRVKSMPVSEPFRPVKSVAVDLFPHTSHCEMVMLLER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	0	1
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	1.00	0.8568
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	3.16	0.8313
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	4.24	0.8403
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	4.58	0.8377
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	6.32	0.8334
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	7.87	0.7543
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	8.60	0.7455	Pt-E2F3.1,E2Fa_1
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	9.16	0.8162
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	10.39	0.8128
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	12.96	0.8011

Compare expression of checked genes

Potri.009G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.