Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60580 491 / 8e-171 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 380 / 2e-127 RING/U-box superfamily protein (.1) AT5G03180 305 / 2e-98 RING/U-box superfamily protein (.1.2) AT3G06330 202 / 2e-59 RING/U-box superfamily protein (.1.2.3) AT5G18760 176 / 8e-50 RING/U-box superfamily protein (.1) AT2G37950 67 / 2e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 62 / 9e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 61 / 2e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 56 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 54 / 6e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129000 [exp] 480 / 4e-166 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 400 / 7e-135 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 386 / 1e-129 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014950 [exp] 244 / 3e-75 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 240 / 6e-74 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 213 / 3e-63 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 63 / 3e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 61 / 3e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 61 / 4e-10 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037410 [exp] 557 / 0 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 552 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10022585 [exp] 540 / 0 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 539 / 0 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10026501 [exp] 410 / 4e-138 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 373 / 6e-124 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 239 / 3e-73 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 239 / 7e-70 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 198 / 8e-58 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 140 / 2e-38 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.009G013300.1 pacid=42770864 polypeptide=Potri.009G013300.1.p locus=Potri.009G013300 ID=Potri.009G013300.1.v4.1 annot-version=v4.1 ATGAGAACTAATCAAGAGAAGCCTGTGAATGAGGGGGAACAAGGTGTTGGTGTATGTTCAAGCCAAGAAGCAGTTGGCAAGGTTAAGGTTGAACACTCAA TAGAAATAGTTGAAGAAACTGATACTTTTCAACATTGGAAGCGGAGAAATCTCTTTCTAGAGATACCCTCAAGAACATTGGAAGACTCCTCGCGGGATTC TGTTGTAATCAGGATGCCCCCGACACCTAGTCCATCTCCTAGGAAAGTAAATTTTCTCCTGACACCTAGTTCTGTGGATGCAAGAGCCAGTGGTTCCCCA GCCCCCTCTTCATCAAAAGGCAAATCATCCTTAAAAAGTTTGTTACCTAAACTAAGCTTCAAGTCTCGAAATTCTACTTTAGATATTGAAAAAGCTGCCA CCCTAGCTCCAGATGCTTCATCTATACCACGGAAGAAACCTTCAATCTCAAGGTCATTGTCACTTACAAGGATCTTCACCCCTAGGATGAAGCAAACATC ATCACTTCCCGTGACGCCAATTGCAAATTCTAAGGCAGAGTCTGCACGTGGGGGAAGCGTTGGTGGCATGCTTAATTCAAGTAGGAAAGGAACCCAGCGG CAGATATTTCGCTCACTCTCGGTTCCTGTTAATAATAAAGAAAGAAGCATAAAGAGGATGGACTCTTTTTTCCGCATGATTCCTTCAACTCCTCAAGTGA AGGAAGGAGATACAATAACAAATGCATCTCCAAGTGTTGATGCTGAAAGCAATGACGTTGATGGTGAGGACATACCCGAAGAAGAGGCTGTTTGTAGAAT TTGTTTGATTGAATTGTGTGAAGGTGGAGAGACCCTTAAGATGGAGTGCAGCTGCAAAGGTGAACTTGCTCTGGCCCATCAAGAATGTGCTGTAAAATGG TTTAGCATCAAAGGTAACAAGATCTGTGATGTTTGCAAGCAAGAGGTTCAGAACCTGCCTGTGACTTTGTTACGAATGCAAGGTGTCTGTTCTAGAACTA TTGGAGCAAGTAGAGCTAATCAGGAAGATGTTAATGGATACAGGGTTTGGCAAGAAGTGCCTGTGCTTGTCATTGTTAGCATGCTTATCTATTTTTGTTT TCTTGAGCAGCTCCTGGTTGAAAAGATGGGCATGGGAGCGATTGCTGTATCCCTTCCTTTTTCTTGTGTGCTGGCCCTTCTCTCATCCATGATCTCATCA ACTATGGTAAGGAGAAGATTTGTTTGGGTTTATGCATCAATTCAATTTGCCCTGGTCGTTCTCTTTGCACATATTTTCTATACTTTGGTCAATGTGCAAG CAGTTCTAGCCATTCTCCTTGCAACACTTTCTGGATTTGGCGTAGCAATGAGTGGGAGTTCCATACTCGTTGAGTTTTTGAGATGGAGAAGGAGGTGGCA CGCACAACATGGGCAGCTGCATAGTTCCCAAGTAATTACTGGACCAGGCCCATTTCAAAGAGCTGTAAATTCATCAAATTCATCAACTAGAGGCCATCAT AACTTCCAGCCGAATGAAGTGGAAAATCCAGAAACTTTACGTGGGAGTTAA
AA sequence Show only first row Show all	>Potri.009G013300.1 pacid=42770864 polypeptide=Potri.009G013300.1.p locus=Potri.009G013300 ID=Potri.009G013300.1.v4.1 annot-version=v4.1 MRTNQEKPVNEGEQGVGVCSSQEAVGKVKVEHSIEIVEETDTFQHWKRRNLFLEIPSRTLEDSSRDSVVIRMPPTPSPSPRKVNFLLTPSSVDARASGSP APSSSKGKSSLKSLLPKLSFKSRNSTLDIEKAATLAPDASSIPRKKPSISRSLSLTRIFTPRMKQTSSLPVTPIANSKAESARGGSVGGMLNSSRKGTQR QIFRSLSVPVNNKERSIKRMDSFFRMIPSTPQVKEGDTITNASPSVDAESNDVDGEDIPEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAVKW FSIKGNKICDVCKQEVQNLPVTLLRMQGVCSRTIGASRANQEDVNGYRVWQEVPVLVIVSMLIYFCFLEQLLVEKMGMGAIAVSLPFSCVLALLSSMISS TMVRRRFVWVYASIQFALVVLFAHIFYTLVNVQAVLAILLATLSGFGVAMSGSSILVEFLRWRRRWHAQHGQLHSSQVITGPGPFQRAVNSSNSSTRGHH NFQPNEVENPETLRGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	0	1
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	1.41	0.8430
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	2.00	0.8358
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	2.44	0.8328	WRKY39.1
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	2.64	0.8573
AT1G29195			unknown protein		Potri.011G066500 [exp]	3.31	0.8012
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	4.24	0.8376
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	4.24	0.7732
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	4.47	0.8332
AT4G02715			unknown protein		Potri.002G050900 [exp]	5.19	0.8108
AT1G32090			early-responsive to dehydratio...		Potri.003G099800 [exp]	8.24	0.7734

Compare expression of checked genes

Potri.009G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.