Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60600 1272 / 0 HDS, ISPG, CSB3, CLB4, GcpE CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210400 [exp] 1338 / 0 AT5G60600 1266 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037407 [exp] 1261 / 0 AT5G60600 1316 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10041304 [exp] 1260 / 0 AT5G60600 1307 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10022583 [exp] 1227 / 0 AT5G60600 1271 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10021480 [exp] 1112 / 0 AT5G60600 1162 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04551 [poplar] [flax] GcpE GcpE protein
Representative CDS sequence Show only first row Show all	>Potri.009G013400.13 pacid=42771256 polypeptide=Potri.009G013400.13.p locus=Potri.009G013400 ID=Potri.009G013400.13.v4.1 annot-version=v4.1 ATGGCTACTGGGGCAGTACCGGCATCGTTTTCGGGGCTACAGATGAAGGAATCAGGCTTAGGGTTCGGAAAAAGCATGGATTTTGTGAGAATTTGTGATA TAAAGAGGATTAAATCCGGTAGAAAAAAGATTTCAATGATCCGAAACTCCAATACTGGTCGTGATATTGTTGAGCTTCAACCAGCATCAGAAGGGAGCTC TCTATTAGTCCCAAGACAAAAGTACTGTGAATCCATTAACAAGACTGTCAGGAGGAAAACACGTACTGTAATGGTGGGAAATGTGCCTCTTGGCAGTGAG CATCCTATACGGATTCAAACTATGACTACAACTGACACTAAGGATGTTGCTGCGACAGTTGAACAGGTGATGATAATAGCAGACAAAGGAGCAGATATAG TTCGGCTAACAGTTCAAGGGAAGAGAGAAGCTGATGCATGTTTTGAAATAAAAAACTCTCTCGTGCAGAAAAATTACAATATTCCTCTGGTTGCGGATAT TCATTTTGCTCCATCTGTTGCGTTGCGAGTATCTGAATGCTTTGACAAGATTCGTGTCAACCCAGGAAATTTTGCTGATAGGCGAGCTCAGTTTGAGAAG CTGGAGTACACAGATGATGACTATCAGAAAGAACTTGAGCATATTGAGAAGGTTTTTACTCCATTGGTTGAGAAATGTAAGAAATATGGAAGGGCAATGC GTATTGGGACAAACCATGGCAGTCTTTCAGATCGTATAATGAGCTACTATGGAGATTCTCCTAGGGGAATGGTTGAATCAGCATTTGAGTTTGCTAGGAT ATGTCGGAAGTTAGACTTTCATAATTTTGTCTTTTCAATGAAAGCAAGCAACCCAGTTGTCATGGTCCAGGCATACCGTCTACTTGTAGCAGAAATGTAT GTTCAAGGCTGGGATTATCCATTACACTTGGGTGTCACTGAAGCTGGAGAAGGTGAAGATGGGCGGATGAAATCTGCAATTGGCATTGGGACTCTTCTTC AGGATGGATTGGGTGATACAATCAGGGTTTCACTTACAGAACCACCAGAAGAGGAGATAGATCCTTGCAGAAAGTTAGCTAATCTTGGTATGAGAGCAGC CAAAATTCAGCAAGGAGTGGCACCATTTAAGGAGAAGTACAGGCGTTACTTTGATTTCCAGCGCCGATCTGGTCAATTGCCAATGCAAAAGGAGGGTGAG GAGGTGGATTATAGAGGTGTCCTGCACCGTGATGGCTCTGTGCTCATGTCAGTTTCTCTAGATCAGTTGAAAGCGCCTGAACTTCTCTACAAGTCACTTG CCGCAAAGCTTGTTGTTGGGATGCCTTTTAAGGATTTGGCAACAGTTGATTCAATCTTATTGAGAGAGCTCCCACCGGTGGATGATAACGATGCTCGGCT AGCGCTCAAAAGGCTGATAGAAGTTAGTATGGGGGTAATAGCTCCTTTATCAGAGCAGCTAACGAAGCCATTACCCAATGCCATGGTTCTTGTCAACCTT AAGGAGTTGTCAACTGGGGCATACAAGCTTTTGCCAGAAGGTACACGCTTGGTTGTGTCTTTGCGTGGTGATGAGCCCTATGAAGAACTGGAAATTCTTA AACACATTGATGCCACGATGCTTCTTCATGATCTACCCTTTTCAGAAGACAAGATTGGCAGAGTGCATACAGCAAGAAGGTTATTTGAGTATCTTGCAGA AAATGCTTTGAATGTCCCCGTGATTCACCATCTTCAGTTTCCAAAAGGGATCCACAGGGATGAACTGGTCATTGGTGCTGGCACAAATGCTGGAGCTCTT TTAGTAGATGGTCTAGGAGATGGTGTCCTAATAGAAGCCCCAGACCAGGATTTTGATTTTCTCAGAAACACATCTTTCAACTTATTACAAGGTTGCAGAA TGAGAAATACAAAGACGGAATATGTCTCATGCCCATCATGTGGAAGAACTTTGTTTGATCTTCAAGAGATAAGCGCACAAATACGAGAAAAGACATCACA CTTGCCTGGTGTCTCGATCGCGATCATGGGTTGCATTGTGAATGGCCCTGGGGAGATGGCTGATGCAGATTTTGGGTATGTCGGTGGTGCTCCTGGAAAG ATTGACCTTTATGTTGGGAAGACGGTGGTAAAGCGTGGAATTGAAATGGAGTCTGCCACCGATGCATTGATCCAGCTTATTAAAGATAATGGCCGCTGGG TAGATCCTCCTCCGGCAGAAGAGTAA
AA sequence Show only first row Show all	>Potri.009G013400.13 pacid=42771256 polypeptide=Potri.009G013400.13.p locus=Potri.009G013400 ID=Potri.009G013400.13.v4.1 annot-version=v4.1 MATGAVPASFSGLQMKESGLGFGKSMDFVRICDIKRIKSGRKKISMIRNSNTGRDIVELQPASEGSSLLVPRQKYCESINKTVRRKTRTVMVGNVPLGSE HPIRIQTMTTTDTKDVAATVEQVMIIADKGADIVRLTVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVSECFDKIRVNPGNFADRRAQFEK LEYTDDDYQKELEHIEKVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMY VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRKLANLGMRAAKIQQGVAPFKEKYRRYFDFQRRSGQLPMQKEGE EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPPVDDNDARLALKRLIEVSMGVIAPLSEQLTKPLPNAMVLVNL KELSTGAYKLLPEGTRLVVSLRGDEPYEELEILKHIDATMLLHDLPFSEDKIGRVHTARRLFEYLAENALNVPVIHHLQFPKGIHRDELVIGAGTNAGAL LVDGLGDGVLIEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK IDLYVGKTVVKRGIEMESATDALIQLIKDNGRWVDPPPAEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.009G013400 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.012G043200 [exp]	1.41	0.9286	MKK9.1
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	10.19	0.9301
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G031251 [exp]	12.24	0.9205
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	16.49	0.9211
AT4G24090			unknown protein		Potri.001G084500 [exp]	19.82	0.9241
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Potri.008G204700 [exp]	23.45	0.9093
AT2G25440		AtRLP20	receptor like protein 20 (.1)		Potri.012G007800 [exp]	24.65	0.9121
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.009G045500 [exp]	28.00	0.9125
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	28.19	0.9123
AT5G20670			Protein of unknown function (D...		Potri.006G140600 [exp]	32.24	0.8935

Compare expression of checked genes

Potri.009G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.