Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60640 711 / 0 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 661 / 0 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 280 / 3e-87 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 276 / 1e-85 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G21750 247 / 4e-75 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 229 / 5e-68 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT2G47470 97 / 3e-22 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G35620 91 / 4e-19 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G32920 80 / 1e-15 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 78 / 4e-15 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183500 [exp] 273 / 2e-84 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.008G040100 [exp] 270 / 5e-84 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.010G222100 [exp] 265 / 1e-82 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G082100 [exp] 237 / 4e-71 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 236 / 8e-71 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 102 / 3e-23 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.014G122800 [exp] 98 / 4e-22 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 98 / 6e-22 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.013G111400 [exp] 93 / 5e-20 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037403 [exp] 760 / 0 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 744 / 0 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 742 / 0 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 384 / 1e-126 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 263 / 1e-80 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 241 / 3e-73 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10018156 [exp] 234 / 9e-70 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 232 / 6e-69 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 228 / 5e-66 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 120 / 3e-29 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF13848 [poplar] [flax] Thioredoxin_6 Thioredoxin-like domain
Representative CDS sequence Show only first row Show all	>Potri.009G013600.2 pacid=42772930 polypeptide=Potri.009G013600.2.p locus=Potri.009G013600 ID=Potri.009G013600.2.v4.1 annot-version=v4.1 ATGTCGACTCGCTTCATTTTCCTCCTCTCTCTCACCGCCCTCCTTCTCTTCTCTCATCTCTCTCCCTCTCTCTCTAAACTCCAAAACGCTGCCGCCGAAG ATGACGATGAGGATCTTAGTTTCCTCGAAGAAGAAACCGACGCCGTTCCTCACGGCCAAGGCCACGGCCACGACCACGACCACGACCACTACCCCGATCC GGACCAATTCGACGAAGAATTCGACAACGAAGATGACCTCGACAACTACTCTGATCTCGATGATTCCGAATTGGATTCTTACAAGGAGCCTGAGATTGAC GACAAGGACGTCGTCGTTTTGAAGGAAGGGAATTTCAGTGATTTTGTGACTAAGAATAAGTTTGTGATGGTGGAATTCTACGCGCCATGGTGTGGTCACT GCCAGTCGTTGGCTCCCGAGTATGCGGCGGCTGCTACGGAGTTGAAAGCGGAAGAAGTGATGTTGGCTAAAGTGGATGCAACGGAAGAGAATGAGTTGGC TCAGGAATATGATATTCAAGGCTTTCCTACTGTTTATTTCTTTGTTGATGGAGTACACAGGCCTTATCCTGGCCCAAGAAACAAAGATGGAATTGTGACA TGGATCAAGAAGAAAATAGGACCTGGTATTTACAATATAACAACAGTGGATGATGCTGAACGTTTGTTGACTTCTGAAACTAAACTTGTCTTGGGCTTCC TCAACTCTTTGGTGGGTCCTGAAAGTGAGGAACTTGCTGCTGCTTCAAGACTTGAAGATGAGGTCAGCTTCTACCAAACTGTGAATCCTGATGTGGCAAA GCTTTTCCACCTTGACCCACAAGCTAAACGCCCAGCTTTAGTCATGCTTAAGAAAGAGGCTGAGAAACTGAGTGTTTTTGATGGTAATTTTTCCAAGTCT GAGATAGCTGAATTCGTATTTGCCAACAAACTGCCATTGGTGACCATTTTTACTAGGGAAAGTGCCCCTTTGATTTTTGAGAGTACAATTAAGAAGCAGC TTTTGCTGTTTGCAATTTCAAATGATTCAGAAAAGGTTGTCCCAATTTTTCAAGAGGCAGCCAGATTATTCAAGGGAAAGCTTATCTTTGTATACGTGGA AATGGACAACGAAGATGTTGGGAAACCTGTTTCAGAATATTTCGGTATCAGTGGAACTGCCCCCAAAGTTCTTGCATACACAGGAAATGATGATGCTAAA AAATTTGTATTTGATGGGGATGTTACCTTGGACAAGATTAAGGCTTTTGGGGAGGATTTCATTGAAGACAAGCTCAAGCCTTTCTTCAAGTCGGATCCAG TTCCTGAATCAAATGATGGGGATGTAAAGATAGTGGTTGGGAATAACTTCGATGAAATTGTTTTGGATGAGTCAAAGGATGTTCTTCTTGAGATCTATGC ACCATGGTGTGGGCATTGCCAATCTTTGGAGCCAACATACAACAAACTTGCCACACATTTGAGGGGCATTGAGTCTATTGTTATAGCCAAGATGGATGGA ACAACAAATGAGCATCCCAGGGCAAAGTCGGATGGGTTTCCCACGCTCCTCTTCTTTCCTGCTGGAAACAAGAGCTTTGATCCAATCACCGTGGACACTG ATCGTACCGTGGTTGCATTTTATAAGTTCATCAAGAAACACGCATCGATTCCATTCAAGCTCCAAAAGCCAGCTTCAGCATCAAAAGCAGAAAGTTCAGA TGCCAAAGACGGCATTGAGAGCAGCACGAGAGATGTGAAGGATGAATTGTGA
AA sequence Show only first row Show all	>Potri.009G013600.2 pacid=42772930 polypeptide=Potri.009G013600.2.p locus=Potri.009G013600 ID=Potri.009G013600.2.v4.1 annot-version=v4.1 MSTRFIFLLSLTALLLFSHLSPSLSKLQNAAAEDDDEDLSFLEEETDAVPHGQGHGHDHDHDHYPDPDQFDEEFDNEDDLDNYSDLDDSELDSYKEPEID DKDVVVLKEGNFSDFVTKNKFVMVEFYAPWCGHCQSLAPEYAAAATELKAEEVMLAKVDATEENELAQEYDIQGFPTVYFFVDGVHRPYPGPRNKDGIVT WIKKKIGPGIYNITTVDDAERLLTSETKLVLGFLNSLVGPESEELAAASRLEDEVSFYQTVNPDVAKLFHLDPQAKRPALVMLKKEAEKLSVFDGNFSKS EIAEFVFANKLPLVTIFTRESAPLIFESTIKKQLLLFAISNDSEKVVPIFQEAARLFKGKLIFVYVEMDNEDVGKPVSEYFGISGTAPKVLAYTGNDDAK KFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLATHLRGIESIVIAKMDG TTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFIKKHASIPFKLQKPASASKAESSDAKDGIESSTRDVKDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.009G013600 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	3.00	0.9324
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	4.24	0.9249
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.007G031000 [exp]	5.74	0.9198
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	5.91	0.9019
AT2G44680		CKB4	casein kinase II beta subunit...		Potri.014G052100 [exp]	7.74	0.8849	Pt-CKB3.1
AT1G34130		STT3B	staurosporin and temperature s...		Potri.015G028300 [exp]	12.64	0.8950
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	22.00	0.9064
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	23.66	0.8922
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	25.13	0.8969
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	27.11	0.9021

Compare expression of checked genes

Potri.009G013600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.