Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60660 459 / 7e-165 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT2G37170 458 / 1e-164 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 454 / 5e-163 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37180 454 / 5e-163 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G54820 447 / 2e-160 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G39010 436 / 5e-156 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 432 / 2e-154 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G35100 431 / 3e-154 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 377 / 2e-132 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 374 / 3e-131 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128200 [exp] 488 / 2e-176 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 487 / 5e-176 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.008G039600 [exp] 471 / 9e-170 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.010G222700 [exp] 469 / 6e-169 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.016G089500 [exp] 468 / 9e-169 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 439 / 4e-157 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 426 / 3e-152 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G113300 [exp] 382 / 1e-134 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.005G109300 [exp] 377 / 1e-132 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023184 [exp] 488 / 3e-176 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 468 / 2e-168 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 452 / 4e-162 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 441 / 9e-158 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10014978 [exp] 434 / 4e-155 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 432 / 1e-154 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 432 / 3e-154 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10028273 [exp] 371 / 4e-130 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10041397 [exp] 370 / 6e-130 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10026504 [exp] 367 / 6e-130 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G013900.1 pacid=42772426 polypeptide=Potri.009G013900.1.p locus=Potri.009G013900 ID=Potri.009G013900.1.v4.1 annot-version=v4.1 ATGGCGAAGGACATTGAGGTTGCAGAGCATGGAGAGACTGTGAAGGACTACCAGGACCCACCTCCAGCTCCATTGATTGATGCTGAGGAGCTAGGACAAT GGTCCTTTTACAGGGCTCTTATTGCAGAATTCATCGCCACCCTTCTCTTCCTTTATGTCACAGTCTTGACTGTTATTGGATACAAAAGCCAGACAGACCC AGACAAGGGTCTGGATGCTTGTGGTGGTGTTGGCATTCTTGGTATTGCTTGGGCCTTCGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGTATC TCTGGAGGACACATCAACCCAGCAGTGACCTTTGGTCTGTTTCTGGCGAGGAAGGTGTCGCTCATCAGGGCTGTTTTGTACATGGTGGCACAGTGCTTGG GTGCGATATGCGGCTGTGGTTTGGTGAAGGCCTTCCAAAAGTCTTATTACAATCACTATGGAGGCGGAGCCAACGAGCTGCAGGAAGGGTACAACAAGGG CACTGGATTGGGTGCTGAAATCATCGGTACTTTTGTTCTTGTCTACACTGTCTTCTCCGCCACTGATCCCAAGAGGAATGCTAGAGACTCCCATGTTCCT GTATTGGCACCTCTCCCCATTGGATTTGCTGTGTTCATGGTTCACCTCGCCACAATCCCAATTACTGGTACTGGCATCAACCCTGCTAGGAGCTTCGGAG CTGCTGTTATCTTTAACCAAAGCAAGGCCTGGGATGACCATTGGCTCTTCTGGGTTGGACCCTTCATTGGAGCTGCCATTGCTGCTTTCTACCACCAGTT CATTCTTAGAGCAGCGGCTATTAAGGCTCTAGGATCCTTCAGGAGCAATGCTTAA
AA sequence Show only first row Show all	>Potri.009G013900.1 pacid=42772426 polypeptide=Potri.009G013900.1.p locus=Potri.009G013900 ID=Potri.009G013900.1.v4.1 annot-version=v4.1 MAKDIEVAEHGETVKDYQDPPPAPLIDAEELGQWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPDKGLDACGGVGILGIAWAFGGMIFVLVYCTAGI SGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGCGLVKAFQKSYYNHYGGGANELQEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVP VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNQSKAWDDHWLFWVGPFIGAAIAAFYHQFILRAAAIKALGSFRSNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G013900 [exp]	0	1
AT1G80120			Protein of unknown function (D...		Potri.016G143500 [exp]	9.38	0.9127
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	10.58	0.8344
AT3G21710			unknown protein		Potri.014G151900 [exp]	10.77	0.8517
					Potri.013G070350 [exp]	11.53	0.9142
AT5G26010			Protein phosphatase 2C family ...		Potri.018G059800 [exp]	19.13	0.9100
AT4G00910			Aluminium activated malate tra...		Potri.002G174600 [exp]	23.32	0.9011
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	29.39	0.8971	PRX1.10
AT1G34300			lectin protein kinase family p...		Potri.006G091400 [exp]	30.59	0.8822
AT4G21895			DNA binding (.1)		Potri.011G001901 [exp]	31.41	0.8802
AT1G14540			Peroxidase superfamily protein...		Potri.001G458700 [exp]	31.62	0.8919

Compare expression of checked genes

Potri.009G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.