Plant FIBer expression Database

Potri.009G014400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28390 740 / 0 SAND family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G211200
[exp]
966 / 0 AT2G28390 739 / 0.0 SAND family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000722
[exp]
632 / 0 AT2G28390 656 / 0.0 SAND family protein (.1)
Lus10021472
[exp]
617 / 0 AT2G28390 656 / 0.0 SAND family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Potri.009G014400.2 pacid=42770917 polypeptide=Potri.009G014400.2.p locus=Potri.009G014400 ID=Potri.009G014400.2.v4.1 annot-version=v4.1
ATGTCCTCATCCGATTCCAACTCCTCCTCCGTTGACGATCCCAACCCTAACCCCAAGCCTTTGGATTACCAATTCGAAACCCTAAACCTTGAGCAAGGAT
CCGGTAGCACCATCATCCAAAACGACGTCGACGAAGAAGGACGACAACAAGATCAAGGCTCCTCTTTAAATGGATCGCTGAATGTAAACAGTAACAATAA
CGAACAAGATGACAGAATTGGCCTCGTCAGGAGTGTCGTGTTGAGGCGGACGAACTCGGAGGTGGAGGTGGACGTGAACGGGCCTTCCAGCCCGAGCAGT
AGTGGATACGCCGGCGAGAGAGGGAGCAGTGGCGTCAGTGAGGATGATGAGATAGAGGAGGTTGCAATTGATAGTGCTCTCCATGAGGTTTTTGATTCAC
AAGCTGCCTGGTTGCCTGGCAAACGTCATGTCGATGAGGATGATGCTTCCATATCATGGAGGAAAAGGAAGAAGCATTTTTTTATATTGAGTCACTCTGG
AAAACCAATATATTCCAGATATGGAGATGAACACAAGCTAGCAGGATTTTCAGCGACACTGCAGGCCATAATTTCATTTGTGGAGAATGGGGGGGATCGT
GTCAAATTGGTTAGGGCAGGAAAGCACCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTGTGCATCAGCTGCACGGAACAGCCATATGAATCAT
TGAGGGGGGAATTGGAGCTTATTTATGGTCAGATGATACTCATTTTAACAAAGTCGGTTAATAGATGTTTTGAGAAAAATCCGAAGTTTGATATGACTCC
ATTGCTTGGAGGAACGGATGTTGTCTTCTCATCTCTCATCCATTCATTTAGTTGGAATCCAGCAACATTTCTCCATGCATACACTTGTCTTCCCCTTGCT
TATGGAACGAGGCAAGCTGCAGGTGCTATACTGCATGATGTTGCTGATTCTGGTGTTCTCTTTGCAATATTAATGTGCAAACACAAAGTTGTTAGTCTTG
TTGGTGCTCAAAAAGCTTCTCTTCATCCTGATGACATGCTGCTACTTTCCAACTTCATAATGTCTTCAGAATCATTTAGGACATCTGAATCTTTCTCGCC
AATTTGCCTGCCAAGATATAACCCAATGGCATTTTTGTATGCTTATGTCCGTTATCTTGATGTTGACACATACTTGATGTTGCTTACCACTAGTTCAGAT
GCCTTTCATCATCTTAAGGATTGCAGGATTCGTATCGAAATGGTTCTTTTGAAGTCAAATGTTCTTAGCGAAGTTCAGAGGTCCATGCTGGATGGTGGGA
TGCATGTTGAGGATTTGCCTGCCGATCCATTGTCTCGTCCTGGATCTGCTTCGCCTCATTTTGGGGAGCATCAGGAACCGACCGATTCTCCTAGGAGATT
TAGGGAACCATTTGCTGGGATTGGTGGTCCTGCTGGACTTTGGCATTTCATATATCGTAGTATCTATCTGGAGCAATATATATCTTCTGAGTTTTCGGCA
CCAATTAATAGTCCACAACAGCAGAAAAGATTGTACAGGGCTTACCAGAAACTTTACGCTTCGATGCATGATAAAGGCAACGGGGCGCACAAAACACAGT
TTAGAAGAGATGAGAATTATGTTCTCCTCTGTTGGGTCACCCCAGATTTTGAGCTTTATGCGACATTTGATCCACTTGCAGACAAGGGTTTGGCAATAAA
GACTTGCAACAGGGTCTGTCAATGGGTGAAAGATGTTGAAAATGAGATATTTTTGCTGGGAGCAAGCCCCTTTTCATGGTGA
AA sequence
>Potri.009G014400.2 pacid=42770917 polypeptide=Potri.009G014400.2.p locus=Potri.009G014400 ID=Potri.009G014400.2.v4.1 annot-version=v4.1
MSSSDSNSSSVDDPNPNPKPLDYQFETLNLEQGSGSTIIQNDVDEEGRQQDQGSSLNGSLNVNSNNNEQDDRIGLVRSVVLRRTNSEVEVDVNGPSSPSS
SGYAGERGSSGVSEDDEIEEVAIDSALHEVFDSQAAWLPGKRHVDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDR
VKLVRAGKHQVVFLVKGPIYLVCISCTEQPYESLRGELELIYGQMILILTKSVNRCFEKNPKFDMTPLLGGTDVVFSSLIHSFSWNPATFLHAYTCLPLA
YGTRQAAGAILHDVADSGVLFAILMCKHKVVSLVGAQKASLHPDDMLLLSNFIMSSESFRTSESFSPICLPRYNPMAFLYAYVRYLDVDTYLMLLTTSSD
AFHHLKDCRIRIEMVLLKSNVLSEVQRSMLDGGMHVEDLPADPLSRPGSASPHFGEHQEPTDSPRRFREPFAGIGGPAGLWHFIYRSIYLEQYISSEFSA
PINSPQQQKRLYRAYQKLYASMHDKGNGAHKTQFRRDENYVLLCWVTPDFELYATFDPLADKGLAIKTCNRVCQWVKDVENEIFLLGASPFSW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28390 SAND family protein (.1) Potri.009G014400
[exp]
0 1
AT4G32160 Phox (PX) domain-containing pr... Potri.018G026000
[exp]
4.24 0.7952
AT4G04720 CPK21 calcium-dependent protein kina... Potri.004G015500
[exp]
10.19 0.6990
AT5G19390 Rho GTPase activation protein ... Potri.009G069700
[exp]
12.40 0.7258
AT1G20670 DNA-binding bromodomain-contai... Potri.002G009100
[exp]
14.24 0.6996 BRD901
AT4G14290 alpha/beta-Hydrolases superfam... Potri.010G029200
[exp]
16.15 0.7110
AT5G55060 unknown protein Potri.011G089300
[exp]
21.81 0.6816
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.011G119700
[exp]
35.44 0.5951
AT1G06780 GAUT6 galacturonosyltransferase 6 (.... Potri.005G218900
[exp]
37.70 0.7072
AT1G22620 ATSAC1 suppressor of actin 1, Phospho... Potri.019G080300
[exp]
41.56 0.6333
AT1G02120 VAD1 VASCULAR ASSOCIATED DEATH1, GR... Potri.014G047600
[exp]
43.95 0.6199

Potri.009G014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.