Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HB1.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60690 1382 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT2G34710 1134 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1112 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1095 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1062 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT1G79840 110 / 1e-24 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G04890 79 / 1e-14 HD PDF2 protodermal factor 2 (.1) AT5G52170 76 / 8e-14 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G17710 73 / 6e-13 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G21750 72 / 1e-12 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211300 [exp] 1548 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G372300 [exp] 1201 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1184 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1125 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1120 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.018G045100 [exp] 1099 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.006G237500 [exp] 1098 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.004G074800 [exp] 80 / 4e-15 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.003G096000 [exp] 70 / 4e-12 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021470 [exp] 1406 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1404 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1122 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1114 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1096 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1022 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 1009 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 808 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 101 / 8e-22 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 98 / 1e-20 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0183 [poplar] [flax] PAS_Fold PF08670 [poplar] [flax] MEKHLA MEKHLA domain
Representative CDS sequence Show only first row Show all	>Potri.009G014500.5 pacid=42771284 polypeptide=Potri.009G014500.5.p locus=Potri.009G014500 ID=Potri.009G014500.5.v4.1 annot-version=v4.1 ATGGCGATGGCGGTGGCCCCTCAGCACAGAGAGAGCAGTAGTAGTGGGAGCTTAAACAAGCACCTCACTGATAATGGAAAGTATGTTCGGTACACATCAG AGCAAGTGGAGGCTCTTGAAAGAGTTTACGCCGAGTGCCCTAAGCCAAGCTCTTTGCGCAGGCAACAGTTGATCAGAGAGTGTCCCATTTTGGCTAATAT TGAGCCCAAGCAGATCAAAGTCTGGTTTCAAAATCGCAGGTGTCGAGAGAAGCAGAGAAAAGAGTCCTCAAGACTCCAAACTGTGAACAGGAAATTGACT GCAATGAATAAGCTGTTGATGGAAGAGAATGATCGCCTGCAAAAACAGGTGTCACAGCTGGTGTGTGAAAATGGTTTCATGCAGCAACAACTACAAACTG CACCTGCAGCAGCTGATGCGAGCTGTGACTCCGCGGTTACCACTCCACAGCATTCACTCAGAGATGCCAATAACCCTGCTGGACTCCTCTCATTGGCAGA GGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTT GCCATTTCACAAAGGTGCAGTGGAGTGGCAGCTAGAGCCTGCGGTCTTGTAAGTTTAGAACCTACAAAGCTTGCAGAGATCCTTAAAGATCGTCAATCTT GGTTCCGGGATTGTCGGAACCTTGAAGTTTTCACTGTGTTTCCTGCTGGAAACGGTGGAACAATTGAACTATTATACAGTCAGATATATGCTCCGACAAC TCTAGCTCCTGCGCGGGATTTCTGGACTCTGAGATACACTATAAATTTAGAGAATGGCAGTCTTGTGGTGTGTGAGAGATCTCTTTCTGGTTCTGGTGCT GGACCAAATGCAGCTGCAGCTGCTCAGTTTGTGAGGGCTGAAATGCTTCCTAGTGGTTATTTGATAAGGCCATGTGAAGGAGGAGGGTCAATTATCCACA TCGTGGATCACCTGAATCTTCAGGCATGGAGTGTGCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGCAGTGGCACAAAAAGTGACAATCACGGC TCTGCGCCATGTCAGGCAAATAGCTCATGAAACCAGTGGTGAGGTGGTGTATGGTTTGGGCAGGCAGCCAGCTGTGCTGAGAACCTTTAGCCAAAGATTA AGCAGAGGCTTCAATGATGCAATCAATGGGTTTAATGATGATGGTTGGTCACTGATGAATTCTGATGGAGCTGAGGATGTAATAATTGCTGTTAACACAA CCAAGAACTTGATCAGTGCTAATAATCCTGCTCATTCACTTTCATTCTTGGGAGGGATTCTTTGTGCAAAGGCTTCCATGCTACTGCAAAATGTGCCTCC AGCTGTGCTGGTCCGCTTCCTAAGGGAGCATCGCTCTGAGTGGGCTGATTTCAGTGTTGATGCCTATTCTGCTGCATCGTTGAAAGCTGGTTCATATGCA TATCCAGGGATGAGATCTATGAGGTTTACTGGGAGCCAAATCATCATGCCATTGGGCCACACAATTGAACAAGAAGAGTTGCTTGAAGTTATTCGACTTG AAGGCCATTCTTTTGCACAAGAAGATGCTTTTGTTTCACGGGACATCCATCTCCTACAGATATGTAGTGGAATTGATGAGAATGCTGTTGGAGCCTGTTC TGAACTAGTTTTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCACTGCTACCCTCTGGTTTCCGCGTCATTCCACTGGAATCAAAAACAAAGGAT GCGCAGGAGGCATTGACCACAAATCGCACTCTGGATCTAACATCAAGTCTTGAAGTGGGCCCGGTAACAAACCATGCTTCAGTGGATGGTTCATCATGTC ATTTGCGATCAGTGTTGACTATTGCTTTCCAGTTCCCGTTTGAGAGCAATCTACAGGATAATGTTGCCACCATGGCCCGTCAGTATGTCCGCAGTGTGAT TTCATCTGTCCAGAGGGTTGCCACGGCCATATCTCCATCAGGATTGAATCCAGCTTTGGGACCAAAGCTATCTGCAGGCTCCCCTGAAGCTCTAACACTG GCTCACTGGATCTGCCAAAGTTATTGTTACCATTTAGGAGCAGAATTACTGAGATCTGATTCTGTGGGTGGAGATTCTGTCCTGAAACATCTATGGCATC ATCCGGATGCAATTTTATGTTGTTCATTGGAGGCACTACCAGTGTTCATCTTTGCTAACCAGGCAGGACTTGACATGCTGGAGACAACTCTAGTGGCTCT GCAAGACATCACACTGGATAAGATATTTGATGAATCTGGACGCAAGGCATTGTTTACAGACTTCGCAAAGTTAATGCAACAGGGATTTGCATGCTTGCCT GCTGGAATCTGCATGTCAACAATGGGGCGCAATGTATCATATGAACAAGCTGTTTCATGGAAAGTGCTTGCTGCTGAAGAGAACACTGTCCACTGCATTG CTTTCTCTTTTGTAAACTGGTCTTTTTTGTGA
AA sequence Show only first row Show all	>Potri.009G014500.5 pacid=42771284 polypeptide=Potri.009G014500.5.p locus=Potri.009G014500 ID=Potri.009G014500.5.v4.1 annot-version=v4.1 MAMAVAPQHRESSSSGSLNKHLTDNGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLT AMNKLLMEENDRLQKQVSQLVCENGFMQQQLQTAPAAADASCDSAVTTPQHSLRDANNPAGLLSLAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIF AISQRCSGVAARACGLVSLEPTKLAEILKDRQSWFRDCRNLEVFTVFPAGNGGTIELLYSQIYAPTTLAPARDFWTLRYTINLENGSLVVCERSLSGSGA GPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKAVAQKVTITALRHVRQIAHETSGEVVYGLGRQPAVLRTFSQRL SRGFNDAINGFNDDGWSLMNSDGAEDVIIAVNTTKNLISANNPAHSLSFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFSVDAYSAASLKAGSYA YPGMRSMRFTGSQIIMPLGHTIEQEELLEVIRLEGHSFAQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLLPSGFRVIPLESKTKD AQEALTTNRTLDLTSSLEVGPVTNHASVDGSSCHLRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVATAISPSGLNPALGPKLSAGSPEALTL AHWICQSYCYHLGAELLRSDSVGGDSVLKHLWHHPDAILCCSLEALPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQGFACLP AGICMSTMGRNVSYEQAVSWKVLAAEENTVHCIAFSFVNWSFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	0	1	Pt-HB1.8
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	1.00	0.8103	Pt-HB1.7
AT3G60200			unknown protein		Potri.014G043800 [exp]	2.23	0.7837
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.008G086900 [exp]	2.82	0.7978
AT3G54800			Pleckstrin homology (PH) and l...		Potri.008G038800 [exp]	3.00	0.8038
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	6.32	0.8055
AT1G58350		ZW18	Putative serine esterase fami...		Potri.013G104400 [exp]	12.32	0.7662	Pt-ZW18.2
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	12.48	0.6857	HB1.5
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	14.42	0.7179	AGO906,Pt-AGO1.2
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	15.16	0.7240
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	16.30	0.7317

Compare expression of checked genes

Potri.009G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.